wiki:Roadmap

Roadmap

This page summarizes the roadmaps per major app domain:

Catalogue

Mission: catalogue network to maximize use of samples and data (level 1-4)

Scope:

  • biobankers / data set providers can easily enter data (by hand or automatically)
  • researchers can query the data and go to request data

Stories:

  • Merge ways to define meta data
  • Data modelering overzetten van OMX naar EMX (Data api)
  • Presentatie van data, zoals aggregaten, kunnen tonen als je hierarchische data
  • custom layout
  • Standaard method voor 'drill-down' in multi-dimensional data
  • Standaard model, MIABIS uitbreidingen
  • Handleiding
  • Beheren van data
  • Beheren van de meta-data
  • Row-level security so biobankers can edit their own collections
  • Multi-tenant (like linkedin?)
  • Custom menu to customize
  • Change styling css
  • Implementatie team -> aansluit team met de UMCs
  • Statistics of view, use, citations
  • Audit trail
  • Ontology data type + search (e.g. for dataType)
  • Link to data request procedure

Aggregation:

  • sql query generiek
  • aggregator moet ook sums, counts, concats, kunnen doen
  • groepering in data explorer (visueel samenvoegen van rijen, beinvloed sorteer)

Mutation databases

Mission: relate patients/phenotypes to mutations

Scope:

  • patients (and their phenotypes)
  • mutations (dominant/recessive)
  • publications about above

Stories:

  • for mutations see know/predicted pathogenicity
  • for recessive mutations see known pairs of disease causing mutations
  • for patients see phenotypes, mutations
  • for each record show link to publication/source that has the evidence

Modules

  • EMX upload format (we aim for a standard template)
  • data explorer for patients + mutation (in case of recessive: 2 mutations) + phenotypes
  • data explorer for mutations + related second mutation + concluded pathogenicity (in case of recessive mutation I need to browse by first and second mutation, see col7a1)
  • genome browser with gene, domains, introns/exons, mutations
  • pages for news, background, etc

N.B. this app would be greatly helped by 'nested' data elements to display patient <- mutations relationship

Last modified 10 years ago Last modified on 2014-07-05T21:19:07+02:00