[[BlogList(recent=5, max_size=250, format=float, heading=News)]]
= Welcome to the Genomics Coordination Centre =
The center for genomics databases and analysis tools, courses and workshops. See AboutGcc
== Genetical Genomics ==
 * XgapMolgenis - eXtensible Genotype And Phenotype database for GWL and GWA studies
 * RqtlPackage - R package for the analysis of QTL experiments
 * DesignGg - tool for the experimental design of QTL experiments having multiple factors.
 * GwasPipeline - pipeline for genotype quality control and standard analysis
 * GwasPortal - Research platform for LifeLines genetics research
 * GenomicIslandsAnalysis - Software belonging to the NBIC BRS project "A quantitative account of genomic island acquisitions in prokaryotes"

== Sequencing ==
 * SequencingTools - lists tools and manuals we currently have available for Sequencing.
 * SequencingMolgenis - laboratory information system (LIMS) for Illumina sequencing
== Mass Spectrometry ==
 * DataAnalysisFramework - Data Analysis Framework, aka  PipelineMolgenis
 * [wiki:PeakML] format - file format for mass spectrometry data
 * MzMatch - pipeline for mass spectrometry experiments in the area of metabolomics
 * CilairMolgenis- Database and analysis suite for CILAIR proteomics experiments
== Biobanking ==
 * [animaldb:WikiStart AnimalDB] - for animal observations
 * PhenotypeMolgenis - file format and database for phenotypic data on human and model organisms
 * LocusSpecificMolgenis - A locus specific database for the Col7a1 gene mutations of which cause dystrophic epidermolysis bullosa
 * GenotypeMolgenis - Genetical information management system (aka GIMS), for the genetics laboratory
 * MicroarrayMolgenis - database for microarray gene expression experiments based on the [http://www.mged.org/mage-tab MAGE-TAB] standard

= Internships =
Bachelor- and masterstudents are invited to apply for an internship at the GCC. An overview of suitable projects is available at the GccInternships page.
= Intranet =
 * GccMeetings - Notes on our weekly work meetings
 * GccTicketList - Lists assigned and open tickets over all GCC tracs
 * GccProjects - Matrix of ongoing projects and their relationships
 * GccManuals - How to use the software and servers that we have
 * GccLinks - Hyperlinks to papers and websites of interest
 * GccTeam - Members of the group
 * GccCalendar - Meetings etc
 * GccGroup - Our mailing list and group discussion site
 * GccServers - How to connect to our servers
 * GccIfolder - How to connect to our iFolder
 * GccLogs - Logbooks of GCC people

= BioAssist =
 * BioAssist - Meetings



Please edit ;-)