XgapExchange: HapMap_format_example.txt

File HapMap_format_example.txt, 4.9 KB (added by jvelde, 11 years ago)
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1rs# alleles chrom pos strand assembly# center protLSID assayLSID panelLSID QCcode NA19028 NA19031 NA19035 NA19027 NA19041 NA19046 NA19308 NA19311 NA19317 NA19376 NA19380 NA19383 NA19393 NA19397 NA19430 NA19466 NA19038 NA19314 NA19315 NA19324 NA19328 NA19377 NA19381 NA19398 NA19403 NA19437 NA19439 NA19440 NA19463 NA19467 NA19470 NA19471 NA19473 NA19307 NA19318 NA19319 NA19334 NA19350 NA19352 NA19359 NA19375 NA19428 NA19429 NA19443 NA19455 NA19313 NA19316 NA19321 NA19332 NA19379 NA19391 NA19396 NA19434 NA19435 NA19436 NA19438 NA19445 NA19446 NA19462 NA19468 NA19469 NA19472 NA19346 NA19347 NA19371 NA19374 NA19382 NA19384 NA19385 NA19444 NA19448 NA19452 NA19327 NA19390 NA19399 NA19404 NA19431 NA19449 NA19456 NA19474 NA19373 NA19036 NA19309 NA19394 NA19451 NA19044 NA19360 NA19310 NA19457 NA19372
2rs241846 C/T chr8 81890 + ncbi_b36 sanger urn:LSID:illumina.hapmap.org:Protocol:Human_1M_BeadChip:3 urn:LSID:sanger.hapmap.org:Assay:H1Mrs241846:3 urn:lsid:dcc.hapmap.org:Panel:Luhya_Kenyan:3 QC+ TT TT TT TT TT CT TT TT TT CT TT TT TT TT TT TT TT TT TT TT TT TT TT CT TT TT TT TT TT TT TT NN TT TT TT TT TT TT CT TT TT TT TT TT TT TT TT TT TT TT TT TT TT TT TT TT TT TT TT TT TT TT TT TT TT TT TT TT TT TT TT TT TT TT TT TT TT TT TT TT TT TT TT TT TT TT TT TT TT NN
3rs2906360 C/G chr8 151222 + ncbi_b36 broad urn:LSID:affymetrix.hapmap.org:Protocol:GenomeWideSNP_6.0:3 urn:LSID:broad.hapmap.org:Assay:SNP_A-8325516:3 urn:lsid:dcc.hapmap.org:Panel:Luhya_Kenyan:3 QC+ GG CG GG GG CG GG CG CG GG GG CG GG GG CG CG GG CG GG GG GG CG GG GG CC GG GG CG GG CG GG GG GG GG GG GG GG GG GG GG GG GG GG GG GG NN CG CG CG CC GG CG CG GG CG GG GG CG GG GG NN CG GG CG GG GG GG CG CG CG GG GG GG GG CG GG GG CC CG GG GG CG GG CG CG GG GG CG CG CG GG
4rs6993172 C/T chr8 155982 + ncbi_b36 broad urn:LSID:affymetrix.hapmap.org:Protocol:GenomeWideSNP_6.0:3 urn:LSID:broad.hapmap.org:Assay:SNP_A-8582976:3 urn:lsid:dcc.hapmap.org:Panel:Luhya_Kenyan:3 QC+ CC CC CC CC CC CC CC CC CC CC CC CC CC CC CC CC CC CC CT CC CC CC CC CC CC CC CC CC CC CC CC CC CC CC CC CC CT CT CC CC CC CC CC CC CC CT CC CC CC CC CC CC CC CC CC CC CC CC CC NN CC CT CC CC CC CC CC CC CC CC CC CC CC CC CT CC CC CC CC CT CC CC CC CC CC CC CC CC CC CT
5rs2906364 C/T chr8 158484 + ncbi_b36 broad urn:LSID:affymetrix.hapmap.org:Protocol:GenomeWideSNP_6.0:3 urn:LSID:broad.hapmap.org:Assay:SNP_A-8592148:3 urn:lsid:dcc.hapmap.org:Panel:Luhya_Kenyan:3 QC+ TT TT TT CT CT CT TT TT CC CT TT TT CT TT CT TT TT CT TT TT TT CT TT TT TT TT TT TT TT TT TT TT TT TT TT TT TT CT CT TT TT CT CT TT TT TT CT TT TT TT CT CT TT CT CT CT TT TT CT NN TT TT CT CT CT TT TT TT CT TT TT TT CT TT TT CT TT CT TT TT TT TT TT TT CT CT TT CT TT TT
6rs2003497 A/G chr8 166818 + ncbi_b36 sanger urn:LSID:illumina.hapmap.org:Protocol:Human_1M_BeadChip:3 urn:LSID:sanger.hapmap.org:Assay:H1Mrs2003497:3 urn:lsid:dcc.hapmap.org:Panel:Luhya_Kenyan:3 QC+ AG GG GG AG AG AG GG AG AA AG GG AG AA GG AG AG AG AA GG AG AG AG AG GG AG AG AG AA GG AG AA GG AA GG GG AG GG AG AG AA GG AG AG AA GG GG AG GG GG AG AG AG AA AG AG AG GG AG AA NN AG GG AG AG AA AA AG AG AG AA AG AG AG GG AG AG GG AG GG GG AG AG AG GG AA AG GG AG GG AG
7rs17744505 G/T chr8 169693 + ncbi_b36 broad urn:LSID:affymetrix.hapmap.org:Protocol:GenomeWideSNP_6.0:3 urn:LSID:broad.hapmap.org:Assay:SNP_A-8713612:3 urn:lsid:dcc.hapmap.org:Panel:Luhya_Kenyan:3 QC+ GT GG GG GG GG GT GG GG GG GT GG GG GG GT GG GG GG GG GG GG GG GG GG GG GG GG GG GG GT GG GG GG GG GT GG GG GG GG GG GG GG GG GG GG GG GG GG GT GG GG GG GG GG GG GG GG GG GT GG NN GG GG GG GG GG GG GG GG GG GG GG GT GG GT GG GG GG GG GG GT GG GG GG GG GG GG GG GG GT GG
8rs17744517 A/G chr8 172340 + ncbi_b36 sanger urn:LSID:illumina.hapmap.org:Protocol:Human_1M_BeadChip:3 urn:LSID:sanger.hapmap.org:Assay:H1Mrs17744517:3 urn:lsid:dcc.hapmap.org:Panel:Luhya_Kenyan:3 QC+ AG AA AA AA AA AG AA AA AA AG AA AA AA AG AA AA AA AA AA AA AA AA AA AA AA AA AA AA AG AA AA AA AA AG AA AA AA AA AA AA AA AA AA AA AA AA AA AG AA AA AA AA AA AA AA AA AA AG AA AG AA AA AA AA AA AA AA AA AA AA AA AG AA AG AA AA AA AA AA AG AA AA AA AA AA AA AA AA AG AA
9rs6990702 C/G chr8 173696 + ncbi_b36 broad urn:LSID:affymetrix.hapmap.org:Protocol:GenomeWideSNP_6.0:3 urn:LSID:broad.hapmap.org:Assay:SNP_A-8329754:3 urn:lsid:dcc.hapmap.org:Panel:Luhya_Kenyan:3 QC+ CC CC CC CC CC CC CG CC CC CC CC CG CC CC CC CG CC CC CG CG CC CC CC CC CG CG CC CC CC CC CC CC CC CC CC CC CC CC CC CC CC CC CC CC CC CC CC CC CC CC CC CG CC CC CC CC CC CC CC NN CC CC CC CC CC CG CC CC CC CC CC CC CC CC CC CC CC CC GG CC CC CC CC CC CC CG CG CC CC CC
10rs2906326 C/T chr8 174319 + ncbi_b36 broad urn:LSID:affymetrix.hapmap.org:Protocol:GenomeWideSNP_6.0:3 urn:LSID:broad.hapmap.org:Assay:SNP_A-8338534:3 urn:lsid:dcc.hapmap.org:Panel:Luhya_Kenyan:3 QC+ CT CT TT NN CT CT TT CT CC CT CT CT CC TT CT CT CT TT CT CT CT CT CC TT TT TT CT CC TT CT CC TT CC TT TT TT CC CC CT CT TT CT CC TT CC CT CT TT TT CT CT CT CC CT CC NN CT CT CT NN CT CT CT CT CC CC CT CT CT CC CC CT CT CT CC NN TT CT TT CT CT CT CT TT CT CT TT CT TT CC