Molgenis Computeje 5 User Guide

Born from bioinformatics and life sciences, MOLGENIS compute is a flexible shell script framework to generate big data workflows that can run parallel on clusters and grids. Molgenis Computeje Users can:

  1. Design a workflow.csv with each step as a shell script protocol
  2. Generate and run jobs by iterating over parameters.csv and execute on a compute backend
  3. (Optional) use standardized file and tool management for portable workflows Typical command to generate and run jobs: