TODO:

 * sent email to pheno group about the conflict of the entities : Institute & contact
   * This problem will be solved if the bbmri model is merged in the pheno model.
 * update the ontocat jar in local & svn version (DONE)
   * commit to svn (DONE)
 * ontologies directory changed: this is included in the project , so update the configuration file.
 * update from svn . Eric has added the manuals inside the doc directory .
 * merge the pheno model with the contents of teh bbmri model.  delete the bbmri model and use only pheno model . (this is the solution to the 500 error -- or just add the module auth in the bbmri model . )
 * The problem with the D2RQ server is a compatibility of the .n3 file and the database . The database that is used has a different scheme (pheno database ) with the one that is described in the model file)  .
   * '''Model conflict problem that should be solved : '''
     * The pheno data model contains the auth module 
     * The  bbmri does not contain the auth module . 
     * the bbmri_generate does not run without the module inside . More specifically I receive an error : 
       * java.io.!FileNotFoundException: /Users/despoina/Documents/molgenis4phenotypeWorkspace_helios_cocoa32/molgenis4phenotype_latest1/auth_db.xml (No such file or directory)
     * if the module is added the Exception in thread "main" java.lang.!IllegalArgumentException: elements already exists with name = 'MolgenisUserGroup' is shown. 
     * 
 * Sent an email to the [mailto:Beheer-raetonline@umcg.nl] about the online system file that admins the paycheck .
 *