TODO:

 * sent email to pheno group about the conflict of the entities : Institute & contact
 * update the ontocat jar in local & svn version
 * ontologies directory changed: this is icluded in the project , so update the configuration file.
 * update from svn . Eric has added the manuals inside the doc directory .
 * merge the pheno model with the contents of teh bbmri model.  delete the bbmri model and use only pheno model . (this is the solution to the 500 error -- or just add the module auth in the bbmri model . )