[[BlogList(recent=5, max_size=250, format=float, heading=News)]] = Welcome to the Genomics Coordination Centre = The center for genomics databases and analysis tools, courses and workshops. Contact head Morris Swertz (m.a.swertz@rug.nl) for more information or check [[Internships]] or AboutGcc {{{#!td valign="top" = Study Capturing and Sharing Applications = * [http://www.molgenis.org MOLGENIS] - biosoftware toolkit * [http://www.xgap.org XGAP] - GWAS and GWL * [http://www.animaldb.org AnimalDB] - animal observation * [http://gbic.target.rug.nl/trac/lsdb MutationDB] - mutations and patients * [http://www.phenoflow.org Pheno] - phenotype observations * [http://gbic.target.rug.nl/trac/mage MAGE] - microarray database }}} {{{#!td = Analysis Applications = * [http://www.bbmriwiki.nl Sequencing] - Pipelines for NGS data analysis and annotation * [http://www.bbmriwiki.nl Imputation] - Pipelines for imputation * [RqtlPackage R/QTL] - R package QTL analysis * [http://www.ontocat.org OntoCAT] - ontology toolkit * [DesignGg Design GG] - experimental design of QTL experiments * [GenomicIslandsAnalysis Genomic Islands] - genomic islands * [wiki:PeakML] format - file format for mass spectrometry data * MzMatch - pipeline for mass spectrometry experiments in the area of metabolomics }}} |------------------- {{{#!td valign="top" colspan="2" = Shared Modules = * [wiki:Modules] }}} |------------------- {{{#!td = Intranet = * GccGettingStarted - overview for new GCC participants * GccMeetings - Notes on our work meetings * GccScrum - Our SCRUM project management pages * GccManuals - How to use the software and servers that we have * GccLinks - Hyperlinks to papers and websites of interest * GccTeam - Members of the group * GccCalendar - Meetings etc * GccGroup - Our mailing list and group discussion site * GccServers - How to connect to our servers * GccIfolder - How to connect to our iFolder * GccLogs - Logbooks of GCC people * GccAttachments - Attach here your private stuff * DataSharing/DataStorage on vm7 server }}} {{{#!td valign="top" = Collaborations & Projects= * [http://gbic.biol.rug.nl GBIC] - Groningen Bioinformatics Center, our method partner * [http://www.geneticsgroningen.nl Genetics] - UMCG genetics department hosts the GccTeam * [http://www.rug.nl/cit/index CIT] - Groningen Center for Information Technology hosts our data and computations * [http://www.bbmriwiki.org BBMRI.NL] - Project lead of BBMRI-NL Bioinformatics * [http://wiki.nbic.nl NBIC] - Lead Biobanking task force Netherlands BioInformatics Center * [http://www.lifelines.nl LifeLines] - Developing IT infrastructure for 30yr/165.000 people cohort study * [http://www.ebi.ac.uk EBI] - Visitor European Bioinformatics Institute * [http://www.gen2phen.org EU-GEN2PHEN] - Associated partner Genotype to Phenotype project * [http://www.casimir.ac.uk CASIMIR] - Invited partner Coordination and Sustainability of International Mouse Informatics Resources * [http://www.helmholtz-hzi.de/en/research/host_resistance_and_susceptibility/infection_genetics/externally_funded_projects/sysgenet/ SYSGENET] - European systems genetics network * [http://http://www.panaceaproject.eu/ PANACEA] - Pathway analysis in C. elegans }}}