= Use Cases =

This is a short note on use cases we want to support in the MOLGENIS processing extension

 * Share my pipeline
 * Add new module
 * List my data items
 * Incorporate Galaxy or GenePattern modules in my pipeline
 * How did I produce this result file?
 * Autogenerate a R-suave (?) document that is executable documentation?
 * Export R data annotation packages?

== Notes ==

* We use Freemarker to define templates
* We use shell scripts to execute jobs
* PBS supports dependencies
* Each step should check for completion and have proper return values (so PBS knows and can cancel dependent jobs)