= Downloads =

== [https://sourceforge.net/projects/ontocat/files/ontoCAT/release/ Latest release] ==

[https://sourceforge.net/projects/ontocat/files/ontoCAT/release/ Download]

== Installation ==

An up-to-date list of required external libraries is available from [http://www.ontocat.org/svn/trunk/ontoCAT/lib/ here]. Alternatively you can use the ontocat_with_deps.jar included in the release that has all the dependencies re-packed.
You can also check out the dev version directly from SVN or integrate using Maven:

{{{
svn co
http://www.ontocat.org/svn/trunk/ontoCAT
}}}

== Pre-relase ==
Try the nightly build generated by [http://www.molgenis.org/hudson/job/ontocat/ hudson] if interested in the very latest version of the library. You can get this snapshot from [http://sourceforge.net/projects/ontocat/files/ontoCAT/nightly_build/ sourceforge].

== Alternative OntoCAT versions ==

* '''OntoCAT R package''': Next to core OntoCAT library we also provide an R package to work with ontologies in R environment.
 * [http://bioconductor.org/help/bioc-views/release/bioc/html/ontoCAT.html Light-weight ontoCAT R package version] is available in [http://bioconductor.org Bioconductor] starting from release 2.7, and includes all single-ontology functionality except for methods to work with multiple ontologies and search in OLS and BioPortal.
 * [https://sourceforge.net/projects/ontocat/files/ontoCAT/ontoCAT_R/ontoCAT_R_Full.zip Full ontoCAT R package version] includes batch methods and due to package-size limitations is available only from the ontoCAT project  [https://sourceforge.net/projects/ontocat sourceforge] page. 

* '''OntoCAT database and browser''': Next to core OntoCAT library we also provide the OntoCAT datamanager and browser based on [http://www.molgenis.org/wiki/MolgenisGuide MOLGENIS].
 * Demo: http://gbic.target.rug.nl:8080/ontocatbrowser/
 * You can also check out the dev version directly from SVN:
{{{
svn co
http://www.ontocat.org/svn/trunk/ontoCAT-db/
}}}

* '''OntoCAT REST service''': Next to core OntoCAT we also provide a REST service so you can easily integrate OntoCAT with your javascript.
  * Demo: http://gbic.target.rug.nl:8080/ontocatrest/
  * REST description: http://gbic.target.rug.nl:8080/ontocatrest/rest/?_wadl (definition file describing all possible queries)
  * Example: http://gbic.target.rug.nl:8080/ontocatrest/rest/json/searchAll/heart (searches OLS for term 'heart')
  * __Please note this is for demonstration purposes only__ We do not guarantee the uptime of the service and you should not code against it. Please check out a version from SVN and deploy individually in you production environment.
{{{
svn co
http://www.ontocat.org/svn/trunk/ontoCAT-restservice/
}}}

* '''OntoCAT !GoogleApp''': Next to core OntoCAT we also provide a Google Web Toolkit implementation on the !GoogleApp platform, so you can easily integrate OntoCAT with your GWT applications.
  * Demo: http://ontocat-web.appspot.com/
  * You can also check out the dev version directly from SVN:
{{{
svn co
http://www.ontocat.org/svn/branches/ontocat-GWT/
}}}

* '''OntoCAT ontology mapping application''': Next to core OntoCAT we also provide an ontology mapping application:
 * Download: http://zooma.sourceforge.net

== Older versions ==

See [http://sourceforge.net/projects/ontocat/files/ Archive]