[[BlogList(recent=5, max_size=250, format=float, heading=News)]] = Welcome to MOLGENIS = MOLGENIS is an collaborative open source project on a mission to generate great software infrastructure for life science research. Each app in the MOLGENIS family comes with rich data management interface and plug-in integration of analysis tools in R, Java and web services. = Using the software = MOLGENIS applications: * xQTL Workbench for multi-level QTL mapping ([wiki:xQTL project]) * Dystrophic Epidermolysis Bullosa (deb-central) mutation database ([http://www.deb-central.org project], [http://www.ncbi.nlm.nih.gov/pubmed/21681854 publication]) * eXtensible Genotype and Phenotype database (XGAP) ([wiki:XgapStart project], [http://www.ncbi.nlm.nih.gov/pubmed/20214801 publication]) * Design of Genetical Genomics Experiments (designGG)] ([http://gbic.biol.rug.nl/designGG project], [http://www.biomedcentral.com/1471-2105/10/188 publication]) * BBMRI-NL biobank catalague ([http://www.phenoflow.org/wiki/BiobankCatalog project]) * MAGE-TAB microarray gene experiment object model (MAGETAB-OM)] ([http://magetab-om.sourceforge.net/ project], [http://wwwdev.ebi.ac.uk/microarray-srv/magetab demo]) * Pheno-OM Phenotype observation model ([wiki:PhenoFlow project], [http://wwwdev.ebi.ac.uk/microarray-srv/pheno demo]) * Mouse Resource Browser (MRB) project] ([http://bioit.fleming.gr/mrb/ project], [http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2911845 publication]) * MOLGENIS as data wrapper in Taverna ([http://www.ncbi.nlm.nih.gov/pubmed/19112082 publication]) * Animal observation database (AnimalDB) ([http://www.animaldb.org project]) * Nordic GWAS control database ([http://www.nordicdb.org project], [http://www.nature.com/ejhg/journal/v18/n12/full/ejhg2010112a.html publication]) * GWAS Central curation tool ([http://www.gen2phen.org/content/gwas-central-curation-tool-solving-bioinformatics-challenges-complex-data-management-molgenis project]) * Finnish disease database (FINDIS) ([http://www.schemalet.org/mediawiki/index.php/FINDIS:Database project]) * Bacterial microarrays database (MOLGEN-IS) ([http://www.ncbi.nlm.nih.gov/pubmed/15059831 publication]) * Human Metabolic Pathway Database ([http://vm7.target.rug.nl/humanpathwaydb/ project], [http://www.biomedcentral.com/1752-0509/5/165/abstract publication]) If you think your project should be listed (differently) please [mailto:m.a.swertz@rug.nl let us know] = Developing your own = Generate [wiki:MolgenisGuide generate your own] in three steps: 1. Model what you want for your experiment in a simple XML file [http://www.molgenis.org/browser/molgenis_distro/trunk/molgenis_db.xml example db], [http://www.molgenis.org/browser/molgenis_distro/trunk/molgenis_ui.xml example ui] 1. Run the MOLGENIS generator 1. Use your web application [http://gbicserver1.biol.rug.nl:8080/demo example]. See * [http://www.molgenis.org/attachment/wiki/WikiStart/20111018%20MOLGENIS%204%20tutorial.pdf MOLGENIS tutorial] * MolgenisGuide -- How to generate your own MOLGENIS * MolgenisApps -- Our app suite [in development] * MolgenisFaq -- Frequently asked questions about MOLGENIS and its use * MolgenisGoogleGroup -- Join our Googlegroup mail forum for all things around MOLGENIS = Partners = || [[Image(rug_logo_en.png, align=center, link=http://www.rug.nl/gbic University of Groningen)]] || [[Image(umcg_small.jpg, align=center, link=http://www.geneticsgroningen.nl)]] || [[Image(nbic.png, align=center, link=http://www.nbic.nl)]] || || [[Image(ebi_logo_small.gif, align=center, link=http://www.ebi.ac.uk/fg)]] || [[Image(bbmri.gif, align=center, link=http://www.bbmri.nl)]] || [[Image(lifelines.png, align=center, link=http://www.lifelines.nl)]] || || [[Image(gen2phen.gif, align=center, link=http://www.gen2phen.org)]] || [[Image(panacea.gif, align=center, link=http://www.panaceaproject.eu)]] || [[Image(bioshare.png, 120px, align=center, link=http://www.bioshare.eu)]] || The MOLGENIS project is supported by the University Medical Center Groningen [http://www.rug.nl/umcg/faculteit/disciplinegroepen/medischegenetica/research/index UMCG], Groningen Bioinformatics Center [http://www.rug.nl/gbic GBIC], European Bioinformatics Institute [http://www.ebi.ac.uk EBI] and the Netherlands Bioinformatics Center [http://www.nbic.nl NBIC].