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= [wiki:xQTL xQTL workbench] - Manual =

Seamless data management, analytical pipelines and high throughput cluster computing for xQTL mapping (genotypes, phenotypes, gene expressions, metabolites, gene expressions) in plants, animals and humans.

[http://vm7.target.rug.nl/xqtl Try the online xQTL workbench demo][[BR]]
[http://vm7.target.rug.nl/download/xqtl_workbench.zip Download xQTL workbench] (unzip, '''run.bat''' or '''run.sh''' to start
[wiki:xQTLAdministratorDownload check download instructions])[[BR]]
 * [wiki:xQTL Table of Contents]
   * [wiki:xQTLIntroduction Introduction]
   * '''Biologist'''
     * [wiki:xQTLBiologistLogin Registration and login]
     * [wiki:xQTLBiologistBrowse Browse or search available data]
     * [wiki:xQTLBiologistImport Import new data]
     * [wiki:xQTLBiologistRun Run QTL mapping]
   * '''Bioinformatician'''
     * [wiki:xQTLBioinformaticianScript Add a new R script]
     * [wiki:xQTLBioinformaticianTag Tag data and configure parameters]
     * [wiki:xQTLBioinformaticianAnalysis Setup a new runnable analysis]
     * [wiki:xQTLBioinformaticianGalaxy Galaxy and Cloud]
     * [wiki:xQTLBioinformaticianRCheatSheet Cheat sheet for R scripting]
   * '''Administrator'''
     * [wiki:xQTLAdministratorDownload Installation instructions]
     * [wiki:xQTLAdministratorPermissions Manage users and permissions]
     * [wiki:xQTLAdministratorDatabase Manage database and storage]
     * [wiki:xQTLAdministratorInstall Server/development installation]
     * [wiki:xQTLAdministratorJobs Setup job submission]
   * '''Tutorial'''
     * [wiki:xQTLTutorialStart Overview of the tutorial]
     * [wiki:xQTLTutorialBiologistUploadingData Uploading a new dataset]
     * [wiki:xQTLTutorialBiologistInspectingData Inspecting the uploaded data]
     * [wiki:xQTLTutorialBiologistRunningAnalysis Running a basic QTL analysis]
     * [wiki:xQTLTutorialBiologistBrowsingResults Browse and interpret results]
     * [wiki:xQTLTutorialRqtl R/qtl introduction]