= [wiki:xQTL xQTL workbench] - Manual =

New biotechnologies enable exciting QTL experiments that link genetic variation to 'all' gene expression, protein and metabolite traits.[[BR]]
Powerful software and hardware are available to analyze these new data but the considerable effort needed to configure pipelines, to scale[[BR]]
up processing and to track raw, intermediate and result data are a barrier for most except a small community of experts. Here we report[[BR]]
XGAP/cluster: a collaborative effort to bring seamless data management, advanced analytical pipelines and high throughput cluster computing[[BR]]
together in one box to biologists workbench. 

 * [wiki:xQTL Table of Contents]
   * '''Biologist'''
     * [wiki:xQTLBiologistLogin Registration and login]
     * [wiki:xQTLBiologistBrowse Browse or search available data]
     * [wiki:xQTLBiologistImport Import new data]
     * [wiki:xQTLBiologistRun Run QTL mapping]
   * '''Bioinformatician'''
     * [wiki:xQTLBioinformaticianScript Add a new R script]
     * [wiki:xQTLBioinformaticianTag Tag data and configure parameters]
     * [wiki:xQTLBioinformaticianAnalysis Setup a new runnable analysis]
   * '''Administrator'''
     * [wiki:xQTLAdministratorPermissions Manage users and permissions]
     * [wiki:xQTLAdministratorDatabase Manage database and storage]
     * [wiki:xQTLAdministratorInstall Installation and maintanance]
     * [wiki:xQTLAdministratorJobs Setup job submission]