[[TracNav(xQTL)]]

= [wiki:xQTL xQTL workbench] - Installation instructions =

To run xQTL, you must have [http://www.java.com/ Java] installed. Also, we highly recommend to install [http://www.r-project.org/ R] because this enables you to create graphs, run QTL mapping, and so on.

Feel free to download either the [http://vm7.target.rug.nl/download/xqtl_workbench.zip stable version] or the [http://vm7.target.rug.nl/download/xqtl_workbench_unstable.zip unstable version]. The first is more tested, but the latter is often more advanced or refined.

Below we provide some examples on how to install xQTL on various operating systems. Keep in mind that these methods are only 'typical' cases and can be used interchangeably. The ZIP files simply contain a bunch of Java classes, of which the main class is '''boot/RunStandalone'''. The start scripts (run.bat / run.sh) are nothing more than a `java -Xmx512m boot/RunStandalone` call.

=== Typical Linux download and start ===
`mkdir xqtl_workbench`[[BR]]
`cd xqtl_workbench`[[BR]]
`wget http://vm7.target.rug.nl/download/xqtl_workbench.zip`[[BR]]
`unzip xqtl_workbench.zip`[[BR]]
`chmod u+x run.sh`[[BR]]
`sh run.sh`[[BR]]

=== Typical Windows download and start ===
* Create a folder somewhere named e.g. ''xqtl_workbench''
* Download [http://vm7.target.rug.nl/download/xqtl_workbench.zip xqtl_workbench.zip]
* Extract the content of the ZIP in your ''xqtl_workbench'' folder
* Doubleclick ''run.bat'' (unblock when asked) to start the application

=== Typical Mac download and start ===
Both the Linux and Windows way of installing works. The Linux style requires some commandline skills and you may need to install tools such as `wget` first.

=== Browser support ===
{{{#!html
<table border="1">
<tr><td bgcolor="silver">Browser</td><td bgcolor="silver">Compatible</td><td bgcolor="silver">Layout</td></tr>
<tr><td>Internet Explorer</td><td bgcolor="green">Yes, v.9 tested</td><td bgcolor="orange">Suboptimal</td></tr>
<tr><td>Firefox</td><td bgcolor="green">Yes, v.3 tested</td><td bgcolor="green">Optimal</td></tr>
<tr><td>Chrome</td><td bgcolor="green">Yes, v.15 tested</td><td bgcolor="orange">Suboptimal</td></tr>
<tr><td>Safari</td><td bgcolor="orange">Slow on v.5</td><td bgcolor="red">Bad</td></tr>
<tr><td>Opera</td><td bgcolor="green">Yes, v.11 tested</td><td bgcolor="orange">Suboptimal</td></tr>
<tr><td>Camino</td><td bgcolor="green">Yes, v.2 tested</td><td bgcolor="green">Optimal</td></tr>
</table>
}}}