MolgenisAsGalaxyDatasource: Molgenis.xml

<!-- 
# =====================================================
# $Id: Molgenis.xml 151 2011-09-08 08:12:14Z pieter.neerincx@gmail.com $
# $URL: https://trac.nbic.nl/svn/galaxytools/trunk/tools/general/DataSources/Molgenis.xml $
# $LastChangedDate: 2011-09-08 10:12:14 +0200 (Thu, 08 Sep 2011) $ 
# $LastChangedRevision: 151 $
# $LastChangedBy: pieter.neerincx@gmail.com $
# =====================================================
-->
<!--
Note: This is an example tool.xml file to add a Molgenis DB to your Galaxy.
      The only thing you'll need to change is the http://IPaddress:port/path/molgenis.do to where your Molgenis is hosted 
-->
<tool name="Molgenis" id="Molgenis1" tool_type="data_source" version="1.0">
    <description>test server</description>
    <!-- Removed interpreter="python" attribute from the command tag to prevent Galaxy from appending the tool's dir to the path
         before executing the command. Otherwise it won't respect $__app__.config.tool_path. -->
    <command>python $__app__.config.tool_path/data_source/data_source.py $output $__app__.config.output_size_limit</command>
    <inputs action="http://localhost:8082/molgenis_apps/molgenis.do" check_values="false" method="get" target="_top"> 
        <display>go to Molgenis server $GALAXY_URL</display>
        <param name="GALAXY_URL" type="baseurl" value="/tool_runner?tool_id=Molgenis1" />
    </inputs>
    <request_param_translation>
        <request_param galaxy_name="URL_method" remote_name="URL_method" missing="get" />
        <request_param galaxy_name="URL" remote_name="URL" missing="" />
        <request_param galaxy_name="name" remote_name="name" missing="Imported from Molgenis" />
        <request_param galaxy_name="data_type" remote_name="data_type" missing="tabular" />
        <!-- If your Molgenis instance can provide additional meta-data for the data uploaded to Galaxy,
             you can specify these with the additional request params below.
             Note: dbkey = the database version and in the case of genomic data this is the genome assembly/annotation build number.
             For more details check the online docs @ the Galaxy Wiki.  
        <request_param galaxy_name="dbkey" remote_name="" missing="" />
        <request_param galaxy_name="table" remote_name="" missing="" />
        <request_param galaxy_name="organism" remote_name="" missing="" />
        <request_param galaxy_name="description" remote_name="" missing="" />
        <request_param galaxy_name="info" remote_name="" missing="" />
        -->
    </request_param_translation>
    <uihints minwidth="800"/>
    <outputs>
        <data name="output" format="tabular" />
    </outputs>
    <options sanitize="False" refresh="True"/>
</tool>