wiki:DespoinaLog/2010/05/04

Version 1 (modified by trac, 14 years ago) (diff)

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Problems in Molgenis update

  • After last update from molgenis3_3 , compilation errors:
    • Revealed an error in model :
      • Entity patient contained a field : Syndrome_id , from the old table Syndrome ,which now is User . user_id xref already exists .
        • Changed it in * <field name="PatientID" type="autoid" />
        • since there wasn't any primary key in the table(!) .
        • Also delete database , delete generated folder , Molgenis Generate again....
        • Open mysql as root :
          • mysql> create database hvp_pilot;
          • * mysql> grant all privileges on hvp_pilot.* to molgenis@localhost identified by 'molgenis'; flush privileges;
        • Clear & delete tomcat, run -->
      • Another revealed error :
        • java.io.IOException: Cannot run program "dot": error=2, No such file or directory
          • later : install graphviz
      • Created a new project in workspace in order to debug . potential problem in lucene code ??
        • the problem is the naming of fields in DB ?