Changes between Version 29 and Version 30 of HPC_deploy


Ignore:
Timestamp:
2015-11-19T01:51:24+01:00 (9 years ago)
Author:
Pieter Neerincx
Comment:

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  • HPC_deploy

    v29 v30  
    129129lrwxrwxrwx  1 umcg-pneerincx umcg-depad   45 Sep 24 16:22 default -> 3.1.2-Molgenis-Compute-v15.04.1-Java-1.7.0_80
    130130}}}
    131 Note that all module files for all apps are in {{{/apps/modules/all/}}} and we only see symlinks in {{{/apps/modules/bio/}}}. Version 3.2.1 is the latest, but 3.1.2 has been designated as default using a symlink. The symlink must be a relative one pointing to file or another symlink in the same directory. We can check with if the symlink was recognised using:
     131Note that all module files for all apps are in {{{/apps/modules/all/}}} and we only see symlinks in {{{/apps/modules/bio/}}}. Version 3.2.1 is the latest, but 3.1.2 has been designated as default using a symlink. The symlink must be a relative one pointing to file or another symlink in the same directory. You may have to [wiki:#UpdateCacheAndSync update the Lmod caches] before the change in default version takes effect. We can check with if the symlink was recognised using:
    132132{{{
    133133$> module avail NGS_DNA
     
    151151}}}
    152152
    153 === Deprecating a previously installed older version of an app ===
     153=== Deprecating a previously installed older version of an app (optional) ===
    154154
    155155You can inform users that (a certain version of) an app is deprecated and will be removed in the near future by creating a custom message when an app is added to the environment with {{{module load}}}. Add your custom message to {{{/apps/modules/modules.admin}}}. For example with this modules.admin:
     
    181181--------------------------------------------------------------------------
    182182}}}
    183 
    184 === Updating the Lmod caches and syncing installed software to nodes ===
     183Note: You may have to [wiki:#UpdateCacheAndSync update the Lmod caches] before a change in custom messages takes effect.
     184
     185=== Updating the Lmod caches and syncing installed software to nodes === #UpdateCacheAndSync
    185186
    186187Before you can use the installed software it needs to be synced to various places and the Lmod caches needs to be updated.