| 1 | # Author: Pablo Escobar Lopez |
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| 2 | # Swiss Institute of Bioinformatics (SIB) |
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| 3 | # Biozentrum - University of Basel |
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| 4 | |
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| 5 | easyblock = 'MakeCp' |
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| 6 | |
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| 7 | name = 'BEDTools' |
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| 8 | version = '2.23.0' |
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| 9 | |
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| 10 | homepage = "https://github.com/arq5x/bedtools2" |
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| 11 | description = """The BEDTools utilities allow one to address common genomics tasks such as finding feature overlaps |
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| 12 | and computing coverage. The utilities are largely based on four widely-used file formats: BED, GFF/GTF, VCF, |
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| 13 | and SAM/BAM.""" |
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| 14 | |
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| 15 | toolchain = {'name': 'goolf', 'version': '1.7.20'} |
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| 16 | |
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| 17 | source_urls = ['https://github.com/arq5x/bedtools2/archive/'] |
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| 18 | sources = ['v%(version)s.tar.gz'] |
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| 19 | |
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| 20 | buildopts = 'CXX="$CXX"' |
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| 21 | |
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| 22 | files_to_copy = ["bin", "docs", "data", "genomes", "scripts", "test"] |
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| 23 | |
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| 24 | sanity_check_paths = { |
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| 25 | 'files': ['bin/%s' % x for x in ['bedtools', 'pairToBed', 'mergeBed','bedToBam','fastaFromBed']], |
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| 26 | 'dirs': files_to_copy, |
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| 27 | } |
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| 28 | |
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| 29 | moduleclass = 'bio' |
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