ComputeVM: R-3.1.2-goolf-1.7.20.eb

name = 'R'
version = '3.1.2'

homepage = 'http://www.r-project.org/'
description = """R is a free software environment for statistical computing and graphics."""

toolchain = {'name': 'goolf', 'version': '1.7.20'}

sources = [SOURCE_TAR_GZ]
source_urls = ['http://cran.us.r-project.org/src/base/R-%(version_major)s']

preconfigopts = 'BLAS_LIBS="$LIBBLAS" LAPACK_LIBS="$LIBLAPACK"'
configopts = "--with-lapack --with-blas --with-pic --enable-threads --with-x=no --enable-R-shlib"
# some recommended packages may fail in a parallel build (e.g. Matrix), and we're installing them anyway below
configopts += " --with-recommended-packages=no"

dependencies = [
    ('libreadline', '6.3'),
    ('ncurses', '5.9'),
    ('libpng', '1.6.16'),  # for plotting in R
    ('libjpeg-turbo', '1.4.0'),  # for plottting in R
    ('Java', '1.7.0_51', '', True),  # Java bindings are built if Java is found, might as well provide it
]

name_tmpl = '%(name)s_%(version)s.tar.gz'
ext_options = {
    'source_urls': [
        'http://cran.r-project.org/src/contrib/Archive/%(name)s',  # package archive
        'http://cran.r-project.org/src/contrib/',  # current version of packages
        'http://cran.freestatistics.org/src/contrib',  # mirror alternative for current packages
    ],
    'source_tmpl': name_tmpl,
}
# Bioconductor packages have a different download url
bioconductor_options = {
    'source_urls': [
        'http://www.bioconductor.org/packages/release/bioc/src/contrib/',
        'http://www.bioconductor.org/packages/release/data/annotation/src/contrib/',
        'http://www.bioconductor.org/packages/release/data/experiment/src/contrib/',
        'http://www.bioconductor.org/packages/3.0/bioc/src/contrib/',
        'http://www.bioconductor.org/packages/3.0/data/annotation/src/contrib/',
        'http://www.bioconductor.org/packages/3.0/data/experiment/src/contrib/',
    ],
    'source_tmpl': name_tmpl,
}

# !! order of packages is important !!
# packages updated on January 8th 2015
exts_list = [
    # default libraries, only here to sanity check their presence
    'base',
    'datasets',
    'graphics',
    'grDevices',
    'grid',
    'methods',
    'splines',
    'stats',
    'stats4',
    'tools',
    'utils',
    # Optional
    ('png', '0.1-7', ext_options),
    ('gsalib', '2.1', ext_options),
]

moduleclass = 'lang'