| 1 | name = 'snpEff' |
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| 2 | version = '4.1d' |
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| 3 | |
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| 4 | homepage = 'http://sourceforge.net/projects/snpeff/' |
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| 5 | description = """SnpEff is a variant annotation and effect prediction tool. |
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| 6 | It annotates and predicts the effects of genetic variants (such as amino acid changes).""" |
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| 7 | |
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| 8 | toolchain = {'name': 'dummy', 'version': 'dummy'} |
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| 9 | #easyblock = 'JAR' |
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| 10 | easyblock = 'PackedBinary' |
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| 11 | |
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| 12 | java = 'Java' |
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| 13 | javaver = '1.7.0_76' |
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| 14 | versionsuffix = '-%s-%s' % (java, javaver) |
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| 15 | |
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| 16 | dependencies = [(java, javaver)] |
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| 17 | |
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| 18 | # |
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| 19 | # Example URL: |
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| 20 | # http://downloads.sourceforge.net/project/snpeff/snpEff_v4_1d_core.zip?ts=1429189285&use_mirror=autoselect |
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| 21 | # |
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| 22 | import time |
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| 23 | seconds_after_epoch = int(time.time()) |
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| 24 | source_urls = [('http://downloads.sourceforge.net/project/%s' % name.lower(), '?ts=%s&use_mirror=autoselect' % seconds_after_epoch)] |
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| 25 | sources = [('%s_v%s_core.zip' % (name, version.replace('.', '_')))] |
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| 26 | |
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| 27 | sanity_check_paths = { |
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| 28 | 'files': ["snpEff.jar", "SnpSift.jar" ], |
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| 29 | 'dirs': [] |
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| 30 | } |
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| 31 | |
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| 32 | moduleclass = 'bio' |
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