| | 1 | || '''Deliverables''' || '''Status''' || '''Published as''' || '''notes''' || |
| | 2 | || D.6.1[[BR]][[BR]]R-analysis tools for QTL mapping || Done || xQTL workbench || || |
| | 3 | || D.6.2[[BR]][[BR]]R-analysis tools for eQTL and pQTL mapping || Done || xQTL workbench || || |
| | 4 | || D.6.3[[BR]][[BR]]R-analysis tools for integration of eQTL, pQTL and QTL networks || Done || wormQTL || || |
| | 5 | || D.6.4[[BR]][[BR]] Analysis tools for finding regulator of (e/p)QTLs mapping to same locus || Done || wormQTL || || |
| | 6 | || D.6.5[[BR]][[BR]]Cytoscape network visualisation tools || To be done before June 1, 2012 || wormQTL || Joeri/Danny[[BR]][[BR]]provide gif files and property files so that users can use Cytoscape to visualize network and annotation || |
| | 7 | || D6.6[[BR]][[BR]]Results from analysis run on QTL data || Month45 || || || |
| | 8 | || D6.7[[BR]][[BR]]Results from analysis run on eQTL and pQTL data || Month45 || || || |
| | 9 | || D6.8[[BR]][[BR]]Results from integrative analysis || Month51 || || || |
| | 10 | || D6.9[[BR]][[BR]]Results from extended regulatory analysis || Month51 || || || |
| | 11 | || D.6.10[[BR]][[BR]]Requirements analysis || Done || xQTL workbench || || |
| | 12 | || D6.11[[BR]][[BR]]DSL genetical genomics experiments in C. elegans || Done || wormQTL || || |
| | 13 | || D.6.12[[BR]][[BR]]Code generator || Done || xQTL workbench || || |
| | 14 | || D.6.13[[BR]][[BR]]Reusable components || Done || xQTL workbench || || |
| | 15 | || D.6.14[[BR]][[BR]]Pilot data base || Done || wormQTL || || |
| | 16 | || D.6.15[[BR]][[BR]]Data loaded into database || May 11, 2012 || wormQTL || Yang/Basten/Joeri will provide a detailed list || |
| | 17 | || D.6.16[[BR]][[BR]]Pilot information infrastructure: R-analysis tools connected to database || Done || wormQTL || || |
| | 18 | || D.6.17[[BR]][[BR]]Pilot information infrastructure: external tools connected to system || ongoing || wormQTL || Done: Rqtl, !GenomeBrowser, R, Excel, etc[[BR]][[BR]]TODO: We are thinking to include vulva model as tool as well. Input from CAM is seriously needed*. || |
| | 19 | || D.6.18[[BR]][[BR]]Pilot analysis workflows: biologists able to run useful workflows || May 16, 2012 || || Yang is going to generate 2~3 example workflows. Figures and text will be provided. || |
| | 20 | || D19-25: [CAM] || || || || |
| | 21 | || D.6.26[[BR]][[BR]]Cross-link with results from genome-wide association studies on human cancer || Month 51 || || || |
| | 22 | || D.6.27 [CAM] || || || || |
