Changes between Version 5 and Version 6 of BBMRI


Ignore:
Timestamp:
2010-11-01T09:43:16+01:00 (14 years ago)
Author:
antonak
Comment:

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  • BBMRI

    v5 v6  
    11= BBMRI =
     2[[TOC()]]
    23
    34== Feedback group: ==
    … …  
    1314 * update online version, and send email around to steering committe - morris
    1415
    15 == Task 2: Add biobank information from BBMR-EU ==
     16== Task 2: Add semantic search ==
     17==== Primary goal: to have the semantic search available for BBMRI catalog ====
     18 * reintegrate the semantic search plugin and all dependencies - despoina
     19 * make sure that the search results make sense, i.e., list of features | biobank name - despoina
     20 * make from each element in this list a link to the right biobank (if you get stuck wait) - despoina
     21
     22== Task 3: Add and improve sparql interface
     23==== Primary goal: make catalogue queriable by sparql ====
     24 * Add and check the sparql interface - despoina
     25 * Put it in the online version - despoina
     26 * Email Marco Roos to verify the endpoint and give feedback on it - marco
     27 * Write short wiki page on how to use [http://www.gen2phen.org/post/molgenis-and-d2r Pedro Lopes feedback] - despoina
     28
     29== Task 4: Add biobank information from BBMR-EU catalog ==
    1630==== Primary goal: get european data into the catalog and expand model when needed ====
    1731 * contact the BBMRI-EU catalog (http://gbic.target.rug.nl/trac/molgenis/wiki/BBMRI) - morris
    1832 * get data as csv or something similar - morris
    1933 * reformat csv to match features, protocols, biobanks, contacts, and update model if something is missing - despoina
     34 * update online version, and send email around to steering committee
    2035
    21 == Task 3: Add semantic search ==
    22 ==== Primary goal: to have the semantic search available for BBMRI catalog ====
    23  *
    24 
    25 == Task 4: Add and improve sparql interface
    26 ==== Primary goal: make catalogue queriable by sparql ====
    27  * Add and check the sparql interface - despoina
    28  * Put it in the online version - despoina
    29  * Ask Marco Roos to verify the endpoint and give feedback on it - marco
    30  * Write short wiki page on how to use [http://www.gen2phen.org/post/molgenis-and-d2r Pedro Lopes feedback] - despoina
     36== Project endpoints ==
     37rolling plan but some endpoints
     38  1. We have all Dutch biobanks in the list
     39  2. For each biobank we have a list of features
     40  3. You can search for this biobanks using semantic search
     41  4. You can find related papers and people for each biobank (marco)
     42  5. You have contact information for each biobank so people can find
    3143
    3244
    33 
    34  ==
    35 == Theme 2: start with 'semantic molgenis' ==
    36 ==== First goal: link MOLGENIS to external ontology ====
    3745 * first enhance N3 file with external mapping:
    3846