Changes between Version 11 and Version 12 of ComputeVM


Ignore:
Timestamp:
2015-05-28T11:03:01+02:00 (10 years ago)
Author:
george
Comment:

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  • ComputeVM

    v11 v12  
    1212 * [http://www.molgenis.org/raw-attachment/wiki/ComputeVM/create_resources.sh Resources download and set-up script for NGS analysis workflow]
    1313
    14 == Easy build files ==
     14== Easy build files for bioinformatics tools ==
    1515
    1616These files are already present in our prepared VM, but they also can be used separately, if users want to install NGS workflow resources in their environment.
     
    1818 * [http://www.molgenis.org/raw-attachment/wiki/ComputeVM/BWA-0.7.12-goolf-1.7.20.eb BWA-0.7.12]
    1919 * [http://www.molgenis.org/raw-attachment/wiki/ComputeVM/BEDTools-2.23.0-goolf-1.7.20.eb BEDTools-2.23.0]
     20 * [http://www.molgenis.org/raw-attachment/wiki/ComputeVM/tabix-0.2.6-goolf-1.7.20.eb tabix-0.2.6] Note: tabix module should be installed before installing BCFtools
    2021 * [http://www.molgenis.org/raw-attachment/wiki/ComputeVM/BCFtools-1.2-goolf-1.7.20.eb BCFtools-1.2]
    2122 * [http://www.molgenis.org/raw-attachment/wiki/ComputeVM/FastQC-0.11.3-Java-1.7.0_76.eb FastQC-0.11.3]
     
    2728 * [http://www.molgenis.org/raw-attachment/wiki/ComputeVM/picard.py Picard after installation update script]
    2829 * [http://www.molgenis.org/raw-attachment/wiki/ComputeVM/snpEff-v4.1d-Java-1.7.0_76.eb snpEff-v4.1d]
    29  * [http://www.molgenis.org/raw-attachment/wiki/ComputeVM/tabix-0.2.6-goolf-1.7.20.eb tabix-0.2.6]
    3030 * [http://www.molgenis.org/raw-attachment/wiki/ComputeVM/VCFtools-0.1.12b-goolf-1.7.20-Perl-5.20.2-bare.eb VCFtools-0.1.12b]
     31
     32== Easy build files for R ==
     33
     34R installation requires a number of additional modules to be installed first:
    3135
    3236== Adding own software to the VM ==