Changes between Version 11 and Version 12 of ComputeVM

Timestamp:

2015-05-28T11:03:01+02:00 (9 years ago)

Author:

george

Comment:

--

ComputeVM

@@ -12 +12 @@
  * [http://www.molgenis.org/raw-attachment/wiki/ComputeVM/create_resources.sh Resources download and set-up script for NGS analysis workflow] 
 
-== Easy build files == 
+== Easy build files for bioinformatics tools == 
 
 These files are already present in our prepared VM, but they also can be used separately, if users want to install NGS workflow resources in their environment.
@@ -18 +18 @@
  * [http://www.molgenis.org/raw-attachment/wiki/ComputeVM/BWA-0.7.12-goolf-1.7.20.eb BWA-0.7.12]
  * [http://www.molgenis.org/raw-attachment/wiki/ComputeVM/BEDTools-2.23.0-goolf-1.7.20.eb BEDTools-2.23.0]
+ * [http://www.molgenis.org/raw-attachment/wiki/ComputeVM/tabix-0.2.6-goolf-1.7.20.eb tabix-0.2.6] Note: tabix module should be installed before installing BCFtools
  * [http://www.molgenis.org/raw-attachment/wiki/ComputeVM/BCFtools-1.2-goolf-1.7.20.eb BCFtools-1.2]
  * [http://www.molgenis.org/raw-attachment/wiki/ComputeVM/FastQC-0.11.3-Java-1.7.0_76.eb FastQC-0.11.3]
@@ -27 +28 @@
  * [http://www.molgenis.org/raw-attachment/wiki/ComputeVM/picard.py Picard after installation update script]
  * [http://www.molgenis.org/raw-attachment/wiki/ComputeVM/snpEff-v4.1d-Java-1.7.0_76.eb snpEff-v4.1d]
- * [http://www.molgenis.org/raw-attachment/wiki/ComputeVM/tabix-0.2.6-goolf-1.7.20.eb tabix-0.2.6]
  * [http://www.molgenis.org/raw-attachment/wiki/ComputeVM/VCFtools-0.1.12b-goolf-1.7.20-Perl-5.20.2-bare.eb VCFtools-0.1.12b]
+
+== Easy build files for R ==
+
+R installation requires a number of additional modules to be installed first: 
 
 == Adding own software to the VM ==