Changes between Version 11 and Version 12 of ComputeVM
- Timestamp:
- 2015-05-28T11:03:01+02:00 (10 years ago)
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ComputeVM
v11 v12 12 12 * [http://www.molgenis.org/raw-attachment/wiki/ComputeVM/create_resources.sh Resources download and set-up script for NGS analysis workflow] 13 13 14 == Easy build files ==14 == Easy build files for bioinformatics tools == 15 15 16 16 These files are already present in our prepared VM, but they also can be used separately, if users want to install NGS workflow resources in their environment. … … 18 18 * [http://www.molgenis.org/raw-attachment/wiki/ComputeVM/BWA-0.7.12-goolf-1.7.20.eb BWA-0.7.12] 19 19 * [http://www.molgenis.org/raw-attachment/wiki/ComputeVM/BEDTools-2.23.0-goolf-1.7.20.eb BEDTools-2.23.0] 20 * [http://www.molgenis.org/raw-attachment/wiki/ComputeVM/tabix-0.2.6-goolf-1.7.20.eb tabix-0.2.6] Note: tabix module should be installed before installing BCFtools 20 21 * [http://www.molgenis.org/raw-attachment/wiki/ComputeVM/BCFtools-1.2-goolf-1.7.20.eb BCFtools-1.2] 21 22 * [http://www.molgenis.org/raw-attachment/wiki/ComputeVM/FastQC-0.11.3-Java-1.7.0_76.eb FastQC-0.11.3] … … 27 28 * [http://www.molgenis.org/raw-attachment/wiki/ComputeVM/picard.py Picard after installation update script] 28 29 * [http://www.molgenis.org/raw-attachment/wiki/ComputeVM/snpEff-v4.1d-Java-1.7.0_76.eb snpEff-v4.1d] 29 * [http://www.molgenis.org/raw-attachment/wiki/ComputeVM/tabix-0.2.6-goolf-1.7.20.eb tabix-0.2.6]30 30 * [http://www.molgenis.org/raw-attachment/wiki/ComputeVM/VCFtools-0.1.12b-goolf-1.7.20-Perl-5.20.2-bare.eb VCFtools-0.1.12b] 31 32 == Easy build files for R == 33 34 R installation requires a number of additional modules to be installed first: 31 35 32 36 == Adding own software to the VM ==