Changes between Version 5 and Version 6 of Courses/DataIntegration

Timestamp:

2014-09-18T12:59:13+02:00 (10 years ago)

Author:

Pieter Neerincx

Comment:

--

Courses/DataIntegration

@@ -14 +14 @@
 
 To check this we will:
- * upload the *.bed file describing the regions for which probes were designed in the Ensembl Genome browser.
+ * upload the *.bed.gz file (describing the regions for which probes were designed) in the Ensembl Genome browser.
  * Please note that this info is for build GRCh37 of the human genome. So locate the last Ensembl version GRCh37.
  * Search for your gene of interest
@@ -20 +20 @@
  * Click the ''Configure this page'' button
  * In the popup window select the 4th tab ''Personal Data''
- * Go to ''Custom data'' -> ''Add your data'' in the column on the left and upload the [[attachment:AllExonV5.bed.gz|*.bed file for the SureSelect All Exon V5 kit]].
+ * Go to ''Custom data'' -> ''Add your data'' in the column on the left, select file format ''BED'' and upload the [[attachment:AllExonV5.bed.gz|*.bed file for the SureSelect All Exon V5 kit]].
  * Click the checkmark at the top-right corner of the popup window to close it and wait for the display to update.
  * Optionally click ''Configure this page'' again and enable/disable other annotation tracks
@@ -27 +27 @@
 == Verify custom capturing kit annotation==
 
-For a more targeted approach we designed a capturing kit for all genes from the Clinical Genomics Database (CGD). Upload the [[attachment:CGD_2014-03-12.bed.gz|*.bed file for this capturing kit]] too and check if this more recent kit is better for your genes of interest. If your gene of interest was not part of the CGD, you can search for example for any of these genes: DNMT1, ATXN8, ATXN8OS or DSG1.
+For a more targeted approach we designed a capturing kit for all genes from the Clinical Genomics Database (CGD). Upload the [[attachment:CGD_2014-03-12.bed.gz|*.bed.gz file for this capturing kit]] too and check if this more recent kit is better for your genes of interest. If your gene of interest was not part of the CGD, you can search for example for any of these genes: DNMT1, ATXN8, ATXN8OS or DSG1.
 
-== BioMart ==
-
-
-
-
-
-
-
-
-
-
-
-
-