wiki:DespoinaLog/2010/06/15

Version 1 (modified by trac, 14 years ago) (diff)

--

debug on Lucene indexing on molgenis dbs

Using MultiSearcher in Lucene "all database tables" search :

On DBIndexPlugin.java: SearchLuceneIndex?:

  • if you copy index created on the single gene table - search work: problem @ creation of index.
  • "All tables index" insert in db like this:
    • field : ring finger and WD repeat domain 2 pseudogene
    • field : 27036
    • field : TBCAP1
    • field: Xp21
  • "Single table index " inserts like
  • * stored,omitNorms<geneName:PPRC1> Gene(id='9580' geneName='PPRC1' chromosomeLocation='10q24.32' geneDescription='peroxisome proliferator-activated receptor gamma, coactivator-related 1');
  • Fields are inserted now in the form of :
    • nullclass hvp_pilot2.Gene(id='45020')class hvp_pilot2.Gene(geneName='MIR1287')class hvp_pilot2.Gene(chromosomeLocation='10q24.2')class hvp_pilot2.Gene(geneDescription='microRNA 1287')
    • * So probably the problem may be in the retrieval of these fields (search index - specify the field names for the db class. (NExt todo )

(From ICT plan system biology --> OpenBIS : )

http://www.cisd.ethz.ch/software/openBIS

https://wiki-bsse.ethz.ch/download/attachments/43126125/openBIS_intro_AB_20100421.mp4