wiki:DespoinaLog/2010/11/25

Version 13 (modified by antonak, 13 years ago) (diff)

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gbic server database for bbmri : exists contains data but cannot be shown in the molgenis application forms. Try to uploda form UI , problems with :

  • truncate tables : bbmri, ...
''Unknown column 'Contact.Affilication' in 'field list''''

'''Unknown column 'Contact.labworker' in 'field list''''

'''Unknown column 'Contact.Roles' in 'field list''''



  • created the field in db bbmri table Contact & Roles .
  • Try to mysql dumb form localhost & import in server .
    • Problem with bbmri table (!) There is no bbmri table
  • Contact table is full -->
    • truncate, try to import ...
    • Unknown column 'Panel_individuals.individuals' in 'field list'
      • mysql> alter table Panel_individuals ADD individuals VARCHAR(60);
    • Unknown column 'BiobankInstitute?.Institutes' in 'field list'
      • mysql> alter table BiobankInstitute? ADD Institutes VARCHAR(60); Query OK, 0 rows affected (0.01 sec) Records: 0 Duplicates: 0 Warnings: 0
    • Unknown column 'Biobank_Publications.Publications' in 'field list'
      • * mysql> alter table Biobank_Publications ADD Publications VARCHAR(60);
      • Query OK, 0 rows affected (0.01 sec)
      • Records: 0 Duplicates: 0 Warnings: 0
    • Unknown column BiobankContact?.Contacts:
      • alter table BiobankContact ADD Contacts VARCHAR(60);
      • Query OK, 0 rows affected (0.02 sec)
      • Records: 0 Duplicates: 0 Warnings: 0
    • Unknown column Biobank_topics.Topics in fields list
  • * mysql> alter table Biobank_Topics ADD Topics VARCHAR(60);
  • Query OK, 0 rows affected (0.01 sec)
  • Records: 0 Duplicates: 0 Warnings: 0
''antonak@gbic:~$ mysqlimport -u molgenis -p bbmri bbmri.sql ''

''Enter password: ''

''mysqlimport: Error: Table 'bbmri.bbmri' doesn't exist, when using table: bbmri''

Add the auth module in BBMRI