Biobanks missing from server

Create from scratch (molgenis distro ) the Biobanks (BBMRI), Fill database

this will be faster and more complete : adjust pheno--> ​http://gbic.target.rug.nl:8080/Biobanks/molgenis.do

GCC project

Add gcc integrated bbmri project in gbic server.: ​http://gbic.target.rug.nl:8080/bbmri_gcc/molgenis.do

D2R on gcc model

$$$ mv molgenis-rdf-mapping.n3 molgenis-rdf-mapping_gcc.n3

$$$ d2r-server molgenis-rdf-mapping_gcc.n3

• Fix missing classes: (despoina)
  • * de.fuberlin.wiwiss.d2rq.D2RQException: Object for d2rq:refersToClassMap not found at d2rq:PropertyBridge map:Biobank_materials (E21) *
  • Biobank material table exists in DB :
  • * mysql> describe Biobank_materials;
  • +-----------+---------+------+-----+---------+----------------+
  • | Field | Type | Null | Key | Default | Extra |
  • +-----------+---------+------+-----+---------+----------------+
  • | autoid | int(11) | NO | PRI | NULL | auto_increment |
  • | Materials | int(11) | NO | MUL | NULL | |
  • | Biobank | int(11) | NO | MUL | NULL | |
  • +-----------+---------+------+-----+---------+------------ *
• In magetab_sdrf.xml : 

 <entity name="Material" extends="!ObservationTarget">
  <field name="SourceMaterials" xref_name="SourceTarget" type="mref" xref_entity="Material"  description="The source materials that this material was derived from. These are the edges in the experimental design graph." />
  <field name="protocolApplications" type="mref" xref_entity="ProtocolApplication" description="The protocols used to produce this material" />	

• *