wiki:DespoinaLog_peregrine

Version 1 (modified by trac, 14 years ago) (diff)

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Peregrine

Contact persons

  • H. Mei 
  • Dmitry Katsubo
  • Martijn Schuemie - the original developer of the project
  • Bharat Singh - integrates Peregrine into ConceptWiki? [1]

Code repository

Information/Description?

(morris)

T.M. System Objectives

  • A service to recognize terms in unstructured text (terms from pheno ontologies)
  • a visualization that shows the terms hightlighted in html (in MOLGENIS)
  • (future work: not only simple terms but also E/Q type triplets, or gene-pheno relations, etc).

Use cases

  • A medical doctor pastes a patient description from his own notes and then chooses terms to systematically describe the phenotype
  • A researcher has a body of pubmed articles containing patient reports and wants to classify it to phenotype terms

Question

  • Is Peregrine a good candidate for these use cases?
  • how can we best integrate to Peregrine (embeded via a Jar or via a web service or something)?
  • How can we configure Peregrine to use our own body of terms/ontologies (from OntoCAT).