Changes between Version 17 and Version 18 of HPC_deploy


Ignore:
Timestamp:
2015-11-18T18:18:22+01:00 (8 years ago)
Author:
Pieter Neerincx
Comment:

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  • HPC_deploy

    v17 v18  
    1010* Deployment of bioinformatics software is handled by the bioinformaticians from the ''depad'' group.
    1111
    12 If you want to become part of the ''depad'' group [wiki:Contact contact the helpdesk]. The depad group uses [https://hpcugent.github.io/easybuild/ !EasyBuild], which uses !EasyConfigs as recipes to enforce consistent, reproducible installations.
     12If you want to become part of the ''depad'' group [wiki:Contact contact the helpdesk].
     13The depad group uses [https://hpcugent.github.io/easybuild/ EasyBuild], which uses !EasyConfigs as recipes to enforce consistent, reproducible installations.
     14In a nutshell an EasyConfig deployment recipe can handle the following steps:
     15* (Bootstrap an installation and satisfy dependencies)
     16* Download the (source) code
     17* Verify checksums of the downloads
     18* Unpack the downloads
     19* Configure the build
     20* Compile the code
     21* Run sanity checks to verify the build was Ok
     22* Install the (compiled) code together with it's !EasyBuild log
     23* Generate a module file for use with a module system to configure the environment at runtime.
    1324
    14 
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    16 
    17 For most of the tools there is already an !EasyBuild file existing. These files are stored on github and are called easyconfigs and can be found [https://github.com/hpcugent/easybuild-easyconfigs/tree/master/easybuild/easyconfigs here]
     25The locations where we store source code, deployed apps, their accompanying module files, etc. are documented in the [wiki:HPC_storage#Software Storage SOP].
     26For many apps !EasyBuild !EasyConfigs are already available; These files are stored
     27* On [https://github.com/hpcugent/easybuild-easyconfigs/tree/master/easybuild/easyconfigs https://github.com/hpcugent/easybuild-easyconfigs/tree/master/easybuild/easyconfigs]
    1828
    1929If there is not an easybuild file (.eb) on github and there is no eb file on the cluster (/apps/sources/EasyBuild/custom), we have to create one ourselves.