Changes between Initial Version and Version 1 of MergingGenotypeData


Ignore:
Timestamp:
2013-10-08T14:25:21+02:00 (11 years ago)
Author:
Patrick
Comment:

--

Legend:

Unmodified
Added
Removed
Modified

  • MergingGenotypeData

    v1 v1  
     1Merge using consensus mode of plink. If genotype is not consistent between datasets it is put to missing.
     2
     3 * sample missing rate 0.1 (removed 3 samples)
     4  * This is expected due to missing samples on some chips.
     5 * snp missing rate: 0.02 (failed variants 9,244)
     6 * maf 0.001 (failed variants 2)
     7 * 379,885 variants remaining
     8 * 1,268 samples remaining
     9 * Individual genotype callrate: 0.994411