Status: this is under development.

MOLGENIS is organized as a set of modules which we call plugins. Each plugin adds a combination of MolgenisModels?, MolgenisDomainSpecificLanguage?, MolgenisGenerators? and/or handwritten code. Other plugins may extend other plugins to yet add more functionality. The first plugin where all others build upon is the MOLGENIS database core.

Technical Plugins

• wiki:Plugins/MolgenisCore? - core platform of model parsers, generators, framework and utils
• wiki:Plugins/MolgenisDatabase? - database interface framework on top of MySQL, PostgreSQL and HypersonicSQL
• wiki:Plugins/MolgenisUi? - user interface framework that can be run on the internet

Planned:

• wiki:Plugins/MolgenisAuth? - authentication and secure sharing framework
• wiki:Plugins/MolgenisProcessing? - for easy modeling and running of analysis tools

Functional Plugins

• wiki:Plugins?
• wiki:Plugins/DataMatrix? -
• wiki:Plugins/MolgenisPheno? -
• wiki:Plugins/Mutations? - for representing and working with mutations
• [Modules/XGAP Molecular Phenotypes]
• [Modules/OntoCAT Ontologies]

Systems

Systems are ready to use and download:

• [Systems/XGAP GWAS studies]
• [Systems/XGAP QTL studies]
• [Modules/S Sequence LIMS]
• [Modules/XGAP Animal Observatory]