Changes between Initial Version and Version 1 of Molgenis-connect


Ignore:
Timestamp:
2016-01-14T14:11:50+01:00 (9 years ago)
Author:
cp229
Comment:

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  • Molgenis-connect

    v1 v1  
     1== SORTA ==
     2
     3Molgenis-connect is available as a service running at http://molgenis.org/molgenis-connect
     4[[BR]][[BR]]
     5
     6The source code can be downloaded fromhttps://github.com/molgenis/molgenis/releases/tag/v1.15.0, which can be adapted and used locally as open source under the LGPLv3 license
     7
     8== How to deploy Molgenis-connect in tomcat 7==
     9[[BR]]
     10
     11'''Step 1 - get tomcat 7'''[[BR]]
     12* Download tomcat 7 from: http://apache.xl-mirror.nl/tomcat/tomcat-7/v7.0.67/bin/apache-tomcat-7.0.67.tar.gz
     13[[BR]]
     14
     15'''Step 2 - get SORTA war'''[[BR]]
     16* Download SORTA war from https://molgenis26.target.rug.nl/downloads/sorta/Molgenis-connect.war
     17
     18[[BR]]
     19'''Step 3 - configure Molgenis-connect property file'''[[BR]]
     20* Create the directory ~/.molgenis/molgenis-connect and create a file called molgenis-server.properties in this folder (~ is your home folder)
     21* Add user and database properties to this file, such as this example:
     22{{{
     23db_user=molgenis
     24db_password=molgenis
     25db_uri=jdbc:mysql://localhost/molgenis-connect
     26admin.password=admin
     27user.password=admin
     28}}}
     29* If these properties are not present, Molgenis-connect will not start. This properties-file should be in your home folder, if the file is not there yet, just create it.
     30[[BR]]
     31
     32'''Step 4 - configure tomcat 7'''[[BR]]
     33* Create a file called setenv.sh in apache-tomcat-7.0.67/bin/
     34* Add the configuration to the file, such as this example:
     35{{{
     36CATALINA_OPTS="-Xmx2g -XX:MaxPermSize=256m -XX:+UseConcMarkSweepGC -XX:+CMSClassUnloadingEnabled -Dmolgenis.home=~/.molgenis/molgenis-connect"
     37}}}
     38
     39
     40
     41[[BR]]
     42'''Step 5 - deploy Molgenis-connect in tomcat 7'''[[BR]]
     43* Unzip apache-tomcat-7.0.67.tar.gz
     44* Move Molgenis-connect.war to apache-tomcat-7.0.67/webapps/
     45* Rename Molgenis-connect.war to ROOT.war
     46* start up tomcat
     47{{{
     48sh apache-tomcat-7.[version.number]/bin/catalina.sh start
     49}}}