Changes between Version 15 and Version 16 of MolgenisPlugins


Ignore:
Timestamp:
2010-10-11T15:59:53+02:00 (14 years ago)
Author:
jlops
Comment:

--

Legend:

Unmodified
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  • MolgenisPlugins

    v15 v16  
    1515   * Despoina , Dasha
    1616 * !AddAnimalPlugin
    17   * Location: http://www.molgenis.org/svn/molgenis_projects/molgenis4phenotype/handwritten/java/plugin/addanimal/
    18   * Author: Erik
    19   * Function: Add one or more animals to the database, specifying their name, species, sex and genotype.
     17   * Location: http://www.molgenis.org/svn/molgenis_projects/molgenis4phenotype/handwritten/java/plugin/addanimal/
     18   * Author: Erik
     19   * Function: Add one or more animals to the database, specifying their name, species, sex and genotype.
    2020 * !RemAnimalPlugin
    21   * Location: http://www.molgenis.org/svn/molgenis_projects/molgenis4phenotype/handwritten/java/plugin/addanimal/
    22   * Author: Erik
    23   * Function: Terminate an animal. Its status is set to 'Dead' and it is removed from any experiments it may be part of, allowing the user to set some end state parameters.
     21   * Location: http://www.molgenis.org/svn/molgenis_projects/molgenis4phenotype/handwritten/java/plugin/addanimal/
     22   * Author: Erik
     23   * Function: Terminate an animal. Its status is set to 'Dead' and it is removed from any experiments it may be part of, allowing the user to set some end state parameters.
    2424 * !AddEvent
    25   * Location: http://www.molgenis.org/svn/molgenis_projects/molgenis4phenotype/handwritten/java/plugin/addevent/
    26   * Author: Erik
    27   * Function: Apply a protocol to one or more targets. Upon choosing the protocol, the !AddEventMenuServlet gives back HTML for inputs to set the appropriate feature-values.
     25   * Location: http://www.molgenis.org/svn/molgenis_projects/molgenis4phenotype/handwritten/java/plugin/addevent/
     26   * Author: Erik
     27   * Function: Apply a protocol to one or more targets. Upon choosing the protocol, the !AddEventMenuServlet gives back HTML for inputs to set the appropriate feature-values.
    2828 * !AddLocation
    29   * Location: http://www.molgenis.org/svn/molgenis_projects/molgenis4phenotype/handwritten/java/plugin/addlocation/
    30   * Author: Erik
    31   * Function: Add a location to the database. It is possible to set it as a sublocation of another one, so you can construct hierarchies of locations.
     29   * Location: http://www.molgenis.org/svn/molgenis_projects/molgenis4phenotype/handwritten/java/plugin/addlocation/
     30   * Author: Erik
     31   * Function: Add a location to the database. It is possible to set it as a sublocation of another one, so you can construct hierarchies of locations.
    3232 * !BreedingModule
    33   * Location: http://www.molgenis.org/svn/molgenis_projects/molgenis4phenotype/handwritten/java/plugin/breedingplugin/
    34   * Author: Erik
    35   * Function: This plugin consists of 5 screens. Screen 1 is to make a parent group, a group of one or more females and one or more males that have been put together in the hope that they will produce offspring. Screen 2 is to edit parant groups (under construction). Screen 3 is to register litters, specifying the parent group that produced it, the birth date and the (approximate) size. Screen 4 is to edit litters (under construction). Screen 5 is also still under construction and will enable the user to wean a litter (mammals only), whereupon the pups will be entered into the database as real animals that count for the Yearly Report.
     33   * Location: http://www.molgenis.org/svn/molgenis_projects/molgenis4phenotype/handwritten/java/plugin/breedingplugin/
     34   * Author: Erik
     35   * Function: This plugin consists of 5 screens. Screen 1 is to make a parent group, a group of one or more females and one or more males that have been put together in the hope that they will produce offspring. Screen 2 is to edit parant groups (under construction). Screen 3 is to register litters, specifying the parent group that produced it, the birth date and the (approximate) size. Screen 4 is to edit litters (under construction). Screen 5 is also still under construction and will enable the user to wean a litter (mammals only), whereupon the pups will be entered into the database as real animals that count for the Yearly Report.
    3636 * !EventViewer
    37   * Location: http://www.molgenis.org/svn/molgenis_projects/molgenis4phenotype/handwritten/java/plugin/eventviewer/
    38   * Author: Erik
    39   * Function: Choose an animal and then you are shown all the feature-values that have been applied to it. The !ViewEventsServlet produces the right HTML.
     37   * Location: http://www.molgenis.org/svn/molgenis_projects/molgenis4phenotype/handwritten/java/plugin/eventviewer/
     38   * Author: Erik
     39   * Function: Choose an animal and then you are shown all the feature-values that have been applied to it. The !ViewEventsServlet produces the right HTML.
    4040 * !ShowAnimalsInSubprojects
    41   * Location: http://www.molgenis.org/svn/molgenis_projects/molgenis4phenotype/handwritten/java/plugin/experiments/
    42   * Author: Erik
    43   * Function: Under construction. Show a table of all DEC Subprojects (experiments) and the animals that participate in them. The user should be able to add animals to experiments, edit their properties or remove them from experiments for whatever reason.
     41   * Location: http://www.molgenis.org/svn/molgenis_projects/molgenis4phenotype/handwritten/java/plugin/experiments/
     42   * Author: Erik
     43   * Function: Under construction. Show a table of all DEC Subprojects (experiments) and the animals that participate in them. The user should be able to add animals to experiments, edit their properties or remove them from experiments for whatever reason.
    4444 * !ShowDecProjects
    45   * Location: http://www.molgenis.org/svn/molgenis_projects/molgenis4phenotype/handwritten/java/plugin/experiments/
    46   * Author: Erik
    47   * Function: Show all DEC Projects (applications), allowing the user to add or edit.
     45   * Location: http://www.molgenis.org/svn/molgenis_projects/molgenis4phenotype/handwritten/java/plugin/experiments/
     46   * Author: Erik
     47   * Function: Show all DEC Projects (applications), allowing the user to add or edit.
    4848 * !ShowDecSubprojects
    49   * Location: http://www.molgenis.org/svn/molgenis_projects/molgenis4phenotype/handwritten/java/plugin/experiments/
    50   * Author: Erik
    51   * Function: Show all DEC Subprojects (experiments), allowing the user to add or edit.
     49   * Location: http://www.molgenis.org/svn/molgenis_projects/molgenis4phenotype/handwritten/java/plugin/experiments/
     50   * Author: Erik
     51   * Function: Show all DEC Subprojects (experiments), allowing the user to add or edit.
    5252 * !FillDatabasePlugin
    53   * Location: http://www.molgenis.org/svn/molgenis_projects/molgenis4phenotype/handwritten/java/plugin/fillanimaldb/
    54   * Author: Erik
    55   * Function: Fill the database with targets, features, protocols and values needed to make the system run. For instance, generate a list of species, make a protocol for adding animals to experiments etc. It is also possible to load one or more tables from the old version of AnimalDB (in practice this is for Ate Boerema only).
     53   * Location: http://www.molgenis.org/svn/molgenis_projects/molgenis4phenotype/handwritten/java/plugin/fillanimaldb/
     54   * Author: Erik
     55   * Function: Fill the database with targets, features, protocols and values needed to make the system run. For instance, generate a list of species, make a protocol for adding animals to experiments etc. It is also possible to load one or more tables from the old version of AnimalDB (in practice this is for Ate Boerema only).
    5656 * !ListPlugin
    57   * Location: http://www.molgenis.org/svn/molgenis_projects/molgenis4phenotype/handwritten/java/plugin/listplugin/
    58   * Author: Erik
    59   * Function: Show a matrix of targets x features. The user can select from a selectbox features they want to be shown. Selecting again removes the feature from the matrix again. It is possible to browse through the targets. Furthermore, the user can search in the whole table or in one or more columns, of which the result set can be saved into a targetgroup. jQuery technology is used to construct this matrix. The EventViewerJSONServlet is the underlying datasource, spitting out the data the user wants to see formatted in JSON, so jQuery can parse it into the matrix.
     57   * Location: http://www.molgenis.org/svn/molgenis_projects/molgenis4phenotype/handwritten/java/plugin/listplugin/
     58   * Author: Erik
     59   * Function: Show a matrix of targets x features. The user can select from a selectbox features they want to be shown. Selecting again removes the feature from the matrix again. It is possible to browse through the targets. Furthermore, the user can search in the whole table or in one or more columns, of which the result set can be saved into a targetgroup. jQuery technology is used to construct this matrix. The EventViewerJSONServlet is the underlying datasource, spitting out the data the user wants to see formatted in JSON, so jQuery can parse it into the matrix.
    6060 * !ListPlugin2
    61   * Location: http://www.molgenis.org/svn/molgenis_projects/molgenis4phenotype/handwritten/java/plugin/animaldb/listplugin2/
    62   * Author: Ate
    63   * Function: Under construction. An attempt at the same functionality as the !ListPlugin, except this plugin uses ExtJS technology.
     61   * Location: http://www.molgenis.org/svn/molgenis_projects/molgenis4phenotype/handwritten/java/plugin/animaldb/listplugin2/
     62   * Author: Ate
     63   * Function: Under construction. An attempt at the same functionality as the !ListPlugin, except this plugin uses ExtJS technology.
    6464 * !LocationInfoPlugin
    65   * Location: http://www.molgenis.org/svn/molgenis_projects/molgenis4phenotype/handwritten/java/plugin/locationinfo/
    66   * Author: Erik
    67   * Function: Select a location and this plugin shows how it fits into the location hierarchy. The !LocationInformationServlet provides the appropriate HTML.
     65   * Location: http://www.molgenis.org/svn/molgenis_projects/molgenis4phenotype/handwritten/java/plugin/locationinfo/
     66   * Author: Erik
     67   * Function: Select a location and this plugin shows how it fits into the location hierarchy. The !LocationInformationServlet provides the appropriate HTML.
    6868 * !AddSpecialGroupPlugin
    69   * Location: http://www.molgenis.org/svn/molgenis_projects/molgenis4phenotype/handwritten/java/plugin/specialgroups/
    70   * Author: Erik
    71   * Function: Add a targetgroup. Optionally, the user can label it, either with an existing label (Species, Sex) or a new one.
     69   * Location: http://www.molgenis.org/svn/molgenis_projects/molgenis4phenotype/handwritten/java/plugin/specialgroups/
     70   * Author: Erik
     71   * Function: Add a targetgroup. Optionally, the user can label it, either with an existing label (Species, Sex) or a new one.
    7272 * AnimalDBWelcomeScreenPlugin
    73   * Location: http://www.molgenis.org/svn/molgenis_projects/molgenis4phenotype/handwritten/java/plugin/welcome/
    74   * Author: Erik
    75   * Function: Show an AnimalDB-specific welcome screen.
     73   * Location: http://www.molgenis.org/svn/molgenis_projects/molgenis4phenotype/handwritten/java/plugin/welcome/
     74   * Author: Erik
     75   * Function: Show an AnimalDB-specific welcome screen.
    7676 * !YearlyReportModule
    77   * Location: http://www.molgenis.org/svn/molgenis_projects/molgenis4phenotype/handwritten/java/plugin/yearlyreportplugin/
    78   * Author: Erik
    79   * Function: Show a VWA Yearly Report of a chosen type (4A, 4B, 4C or 5) for a chosen year (max. 5 years back).
     77   * Location: http://www.molgenis.org/svn/molgenis_projects/molgenis4phenotype/handwritten/java/plugin/yearlyreportplugin/
     78   * Author: Erik
     79   * Function: Show a VWA Yearly Report of a chosen type (4A, 4B, 4C or 5) for a chosen year (max. 5 years back).
     80 * Lanes plugin
     81   * Location: !http://www.molgenis.org/svn/sequence_lims/handwritten/java/plugins/
     82   * Author: Joris
     83   * Function: assign sample to lanes in a sequence LIMS platform
     84 *  Matrix plugin
     85   * Location: http://www.molgenis.org/svn/molgenis_distro/3.5/handwritten/java/Matrix/
     86   * Author: Joris
     87   * Function: browse data in pheno-model, support search (expression), sort and add/remove column. Only db backend supported at the moment.