MOLGENIS source code

You can check the latests version (currently 3.3) of the MOLGENIS code via the ​browser or check it out from our open repository at ​http://www.molgenis.org/svn.

If you want to keep track of what is happening in the svn, you can connect to the molgenis-commits@… channel.

What do I need?

MOLGENIS consists of two main components. Current version is 3.3:

1. The software generator 'molgenis'. Check out from ​http://www.molgenis.org/svn/molgenis/3.3
2. The application template 'molgenis_distro'. Check out from ​http://www.molgenis.org/svn/molgenis_distro/3.3

Inside the molgenis_distro you will find in handwritten the 'MolgenisGenerate.java' program. See MolgenisGuide for usage.

What is in the other packages?

• ​archive -- contains older versions
• ​molgenis -- core project. Inside are Eclipse projects, each folder a version
• ​molgenis_distro -- the application template. Inside are Eclipse projects, each folder a version
• ​molgenis_test -- series of models and test suites to verify MOLGENIS functionality
• ​molgenis_online -- development of the online version of MOLGENIS generator
• ​molgenis_processing -- development of processing components as extension to molgenis
• ​molgenis_taverna_plugin -- development of a taverna workbench plugin to access MOLGENIS more easily than just web services

Temporary, need to be cleaned up:

• molgenis3_4_1
• molgenis4eb
• molgenis4xgap_importwizard
• molgenis_online
• molgenis_plugin_matrix
• sequence_lims -- development of a sequence lims
• tags
• xmi_to_molgenis -- convertor from xmi (UML) to molgenis.xml