| | 1 | = Downloads = |
| | 2 | |
| | 3 | == [https://sourceforge.net/projects/ontocat/files/ontoCAT/release/ Latest release] == |
| | 4 | |
| | 5 | [https://sourceforge.net/projects/ontocat/files/ontoCAT/release/ Download] |
| | 6 | |
| | 7 | == Installation == |
| | 8 | |
| | 9 | An up-to-date list of required external libraries is available from [http://www.ontocat.org/svn/trunk/ontoCAT/lib/ here]. Alternatively you can use the ontocat_with_deps.jar included in the release that has all the dependencies re-packed. |
| | 10 | You can also check out the dev version directly from SVN or integrate using Maven: |
| | 11 | |
| | 12 | {{{ |
| | 13 | svn co |
| | 14 | http://www.ontocat.org/svn/trunk/ontoCAT |
| | 15 | }}} |
| | 16 | |
| | 17 | == Pre-relase == |
| | 18 | Try the nightly build generated by [http://www.molgenis.org/hudson/job/ontocat/ hudson] if interested in the very latest version of the library. You can get this snapshot from [http://sourceforge.net/projects/ontocat/files/ontoCAT/nightly_build/ sourceforge]. |
| | 19 | |
| | 20 | == Alternative OntoCAT versions == |
| | 21 | |
| | 22 | * '''OntoCAT R package''': Next to core OntoCAT library we also provide an R package to work with ontologies in R environment. |
| | 23 | * [http://bioconductor.org/help/bioc-views/release/bioc/html/ontoCAT.html Light-weight ontoCAT R package version] is available in [http://bioconductor.org Bioconductor] starting from release 2.7, and includes all single-ontology functionality except for methods to work with multiple ontologies and search in OLS and BioPortal. |
| | 24 | * [https://sourceforge.net/projects/ontocat/files/ontoCAT/ontoCAT_R/ontoCAT_R_Full.zip Full ontoCAT R package version] includes batch methods and due to package-size limitations is available only from the ontoCAT project [https://sourceforge.net/projects/ontocat sourceforge] page. |
| | 25 | |
| | 26 | * '''OntoCAT database and browser''': Next to core OntoCAT library we also provide the OntoCAT datamanager and browser based on [http://www.molgenis.org/wiki/MolgenisGuide MOLGENIS]. |
| | 27 | * Demo: http://gbic.target.rug.nl:8080/ontocatbrowser/ |
| | 28 | * You can also check out the dev version directly from SVN: |
| | 29 | {{{ |
| | 30 | svn co |
| | 31 | http://www.ontocat.org/svn/trunk/ontoCAT-db/ |
| | 32 | }}} |
| | 33 | |
| | 34 | * '''OntoCAT REST service''': Next to core OntoCAT we also provide a REST service so you can easily integrate OntoCAT with your javascript. |
| | 35 | * Demo: http://gbic.target.rug.nl:8080/ontocatrest/ |
| | 36 | * REST description: http://gbic.target.rug.nl:8080/ontocatrest/rest/?_wadl (definition file describing all possible queries) |
| | 37 | * Example: http://gbic.target.rug.nl:8080/ontocatrest/rest/json/searchAll/heart (searches OLS for term 'heart') |
| | 38 | * __Please note this is for demonstration purposes only__ We do not guarantee the uptime of the service and you should not code against it. Please check out a version from SVN and deploy individually in you production environment. |
| | 39 | {{{ |
| | 40 | svn co |
| | 41 | http://www.ontocat.org/svn/trunk/ontoCAT-restservice/ |
| | 42 | }}} |
| | 43 | |
| | 44 | * '''OntoCAT !GoogleApp''': Next to core OntoCAT we also provide a Google Web Toolkit implementation on the !GoogleApp platform, so you can easily integrate OntoCAT with your GWT applications. |
| | 45 | * Demo: http://ontocat-web.appspot.com/ |
| | 46 | * You can also check out the dev version directly from SVN: |
| | 47 | {{{ |
| | 48 | svn co |
| | 49 | http://www.ontocat.org/svn/branches/ontocat-GWT/ |
| | 50 | }}} |
| | 51 | |
| | 52 | * '''OntoCAT ontology mapping application''': Next to core OntoCAT we also provide an ontology mapping application: |
| | 53 | * Download: http://zooma.sourceforge.net |
| | 54 | |
| | 55 | == Older versions == |
| | 56 | |
| | 57 | See [http://sourceforge.net/projects/ontocat/files/ Archive] |
