Changes between Version 24 and Version 25 of SopConvertLifeLinesGenoData


Ignore:
Timestamp:
2012-04-10T10:47:41+02:00 (14 years ago)
Author:
Morris Swertz
Comment:

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  • SopConvertLifeLinesGenoData

    v24 v25  
    1515== Expected outputs ==
    1616
     17The IDS should be filtered (e.g. 5000) and recoded (psuedoids) for one study.
     18
    1719User expects files in PLINK format:
    18 * BIM/BED/FAM genotype files (with missing value phenotype, monomorphic filtered)
    19 * IDEM but then splitted per chromosome
    20 * MAP/PED dosage files (with missing value phenotype, monomorphic filtered)
    21 * IDEM but then splitted per chromosome
     20* PED/MAP/FAM genotype files (split per chromosome, with missing value phenotype, monomorphic filtered)
     21* BIM/BED/FAM genotype files (split per chromosome, with missing value phenotype, monomorphic filtered)
     22* MAP/PED dosage files (split per chromosome, with missing value phenotype, monomorphic filtered)
    2223
    2324== Required inputs ==