Changes between Version 25 and Version 26 of SopConvertLifeLinesGenoData

Timestamp:

2012-04-10T10:50:20+02:00 (13 years ago)

Author:

Morris Swertz

Comment:

--

SopConvertLifeLinesGenoData

@@ -25 +25 @@
 
 The following are input for the conversion procedure:
-* TriTyper imputed data files: /target/gpfs2/lifelines_rp/releases/LL3/
-* mapping file for study to select and re-pseudonomize identifiers
+* Beagle imputed genotype files (fam/ped/map): /target/gpfs2/lifelines_rp/releases/LL3/BeagleImputedPedAndMap
+* Beagle imputed dosage files (dose): /target/gpfs2/lifelines_rp/releases/LL3/BeagleImputedDosage
+* '''per study''' mapping file for study to filter and re-pseudonomize identifiers
 
 Example mapping file:
@@ -38 +39 @@
  * So: Geno individual ID's - TAB - Study pseudonyms - TAB - Phenotypes (can be all 0's as TFAM will be generated later by the user)
  * Items are TAB-separated and it doesn't end with a newline
-
 == Procedure ==