Changes between Version 28 and Version 29 of SopConvertLifeLinesGenoData


Ignore:
Timestamp:
2012-04-21T11:19:05+02:00 (13 years ago)
Author:
Morris Swertz
Comment:

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  • SopConvertLifeLinesGenoData

    v28 v29  
    11= SOP for converting LifeLines Geno Data  =
    2 
    32[[TOC()]]
    43
     4How to pseudonomize geno data per study
     5
    56This SOP applies to LL3.
    6 
    7 >TODO: make molgenis 'compute' pipeline for this :-)
    87
    98Specifications:
    109* Geno data is released to researcher 'per study' (i.e. an approved research request).
    1110* Per study a subset of the individuals is selected
    12 * The individual identifiers are 're-pseunomized' from 'marcel identifiers' to 'study identifiers' (so data can not be matched between studies)
     11* The individual identifiers are 're-pseunomized' from 'WGA' to 'study' identifiers
    1312* Data is reformatted in various PLINK formats
    1413