Changes between Version 64 and Version 65 of SopConvertLifeLinesGenoData


Ignore:
Timestamp:
2013-03-29T11:48:43+01:00 (12 years ago)
Author:
cp229
Comment:

--

Legend:

Unmodified
Added
Removed
Modified

  • SopConvertLifeLinesGenoData

    v64 v65  
    1212* '''studyId''' - the id of study. E.g. 'OV039'
    1313* '''studyDir''' - the folder where all converted data should go. E.g. '../home/lifelines_OV039'
    14 * '''mappingFile''' - describing what WGA ids are included and what their study ids are. E.g.:
    15 {{{
    16 1   LL_WGA0001   1   12345
    17 1   LL_WGA0002   1   09876
    18 1   LL_WGA0003   1   64542
     14* '''mappingFile''' - describing the mapping of 'lifelines gwas IDs' to 'study sample IDs' are. E.g.:
     15{{{
     16LL_WGA0001   12345
     17LL_WGA0002   09876
     18LL_WGA0003   64542
    1919...
    2020}}}
    2121
    22   * So: Geno family ID's - TAB - Geno individual ID's - TAB - Study family psuedonyms TAB Study pseudonyms
     22  * So: LifeLines GWAS ID's - TAB - Study sample IDs
    2323  * Items are TAB-separated and it doesn't end with a newline
    2424
    25 >>WARNING: NOW THE MAPPING FILE DOES NOT YET CONTAIN FAMILY PSEUDONYMS!
    2625
    2726== Constants over all studies (for LL3): ==