Changes between Version 10 and Version 11 of VCFAggregateScriptManual

Timestamp:

2014-09-17T14:43:49+02:00 (10 years ago)

Author:

jvelde

Comment:

--

VCFAggregateScriptManual

@@ -10 +10 @@
 
 {{{
-export PATH=/Volumes/Users/Software/vcftools_0.1.10/bin/:/Volumes/Users/Software/tabix-0.2.6/:${PATH}
+export PATH=/Applications/vcftools_0.1.10/bin/:/Applications/tabix-0.2.6/:$PATH
 }}}
 
-Or a more permanent option (.bashrc file or so)
+Or a more permanent option (.bashrc or .profile file or so)
+
+Also, add the VCFtools Perl library to the Perl5 library locations:
+
+{{{
+export PERL5LIB=/Applications/vcftools_0.1.11/perl/:$PERL5LIB
+}}}
 
 == 3. Download and install Perl if you don't have it ==
@@ -26 +32 @@
 
 {{{
-wget https://raw.githubusercontent.com/molgenis/ngs-utils/master/scripts/vcf-fill-gtc.pl
+wget https://raw.githubusercontent.com/molgenis/ngs-utils/master/scripts/vcf-fill-gtc.pl --no-check-certificate
 }}}