Changes between Version 106 and Version 107 of WikiStart


Ignore:
Timestamp:
2010-10-01T23:26:34+02:00 (14 years ago)
Author:
Morris Swertz
Comment:

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  • WikiStart

    v106 v107  
    11[[BlogList(recent=5, max_size=250, format=float, heading=News)]]
     2= Rapid generation of biosoftware you want to have =
     3Just download a [MolgenisSystemList preconfigured MOLGENIS] or [MolgenisGuide generate your own] in three steps:
     4 1. Model what you want for your experiment in a simple XML file [http://www.molgenis.org/browser/molgenis_distro/3.3/molgenis_db.xml example db], [http://www.molgenis.org/browser/molgenis_distro/3.3/molgenis_ui.xml example ui]
     5 1. Run the MOLGENIS generator
     6 1. Use your web application [http://gbicserver1.biol.rug.nl:8080/demo example].
     7Each MOLGENIS comes with rich data management interface and plug-in integration of analysis tools in R, Java and web services.
    28
    3 = Welcome to the Genomics Coordination Centre =
    4 The center for genomics databases and analysis tools, courses and workshops. See AboutGcc
     9= Using MOLGENIS =
     10 * MolgenisSystemList -- Examples of MOLGENIS powered systems
     11 * MolgenisGuide -- How to generate your own molgenis
     12 * MolgenisDownload -- Get the software
     13 * MolgenisFaq -- Frequently asked questions about MOLGENIS and its use
     14 * MolgenisSystemList -- Catalog of existing MOLGENIS systems you can use as starting point
     15 * MolgenisSourceCode -- Browse and hack the source code
     16 * MolgenisJavaDoc -- Explore the APIs
     17 * MolgenisGoogleGroup -- Join our google group mail forum for all things around MOLGENIS
     18 * Watch it evolve: ChangeLog, [http://gbic.target.rug.nl/trac/molgenis/roadmap RoadMap]
    519
    6 {{{#!td
     20For a complete list of available wiki pages, see the TitleIndex.
    721
    8 = Databases =
    9 * [http://www.molgenis.org MOLGENIS] - biosoftware toolkit
    10 * [http://www.xgap.org XGAP] - GWAS and GWL
    11 * [http://www.animaldb.org AnimalDB] - animal observation
    12 * [http://gbic.target.rug.nl/trac/lsdb MutationDB] - mutations and patients
    13 * [http://www.phenoflow.org Pheno] - phenotype observations
    14 * [http://gbic.target.rug.nl/trac/mage MAGE] - microarray database
     22= Getting involved =
     23[http://gbic.target.rug.nl/trac/molgenis/register Register] and then login to:
    1524
    16 }}}
    17 {{{#!td
     25 * TracGuide -- Read on how to use this website, and how to add content
     26 * MolgenisProject -- Who is currently behind MOLGENIS
     27 * Apply for a MolgenisInternship
     28 * Add to the MolgenisGuide,
     29 * brainstorm new ideas on MolgenisEnhancements
     30 * or hack the MolgenisSourceCode.
     31 * SequencingWiki
    1832
    19 = Analysis =
    20  * [RqtlPackage R/QTL] - R package QTL analysis
    21  * [http://www.ontocat.org OntoCAT] - ontology toolkit
    22  * [DesignGg Design GG] - experimental design of QTL experiments
    23  * [GenomicIslandsAnalysis Genomic Islands] - genomic islands
    24  * [wiki:PeakML] format - file format for mass spectrometry data
    25  * MzMatch - pipeline for mass spectrometry experiments in the area of metabolomics
    26 }}}
    27 |-------------------
    28 {{{#!td
    29 
    30 = Intranet =
    31  * GccPlugins - overview of GCC plugins
    32  * GccMeetings - Notes on our weekly work meetings
    33  * GccProjects - Matrix of ongoing projects and their relationships
    34  * GccManuals - How to use the software and servers that we have
    35  * GccLinks - Hyperlinks to papers and websites of interest
    36  * GccTeam - Members of the group
    37  * GccCalendar - Meetings etc
    38  * GccGroup - Our mailing list and group discussion site
    39  * GccServers - How to connect to our servers
    40  * GccIfolder - How to connect to our iFolder
    41  * GccLogs - Logbooks of GCC people
    42 
    43 }}}
    44 {{{#!td valign="top"
    45 
    46 = Collaborations =
    47 * [http://gbic.biol.rug.nl GBIC] - Groningen Bioinformatics Center
    48 * [http://www.geneticsgroningen.nl Genetics] - UMCG genetics department
    49 * [http://www.rug.nl/cit/index] - Groningen Center for Information Technology
    50 * [http://www.bbmriwiki.org BBMRI.NL] - Bioinformatics for Biobanking project
    51 * [http://wiki.nbic.nl NBIC] - Netherlands BioInformatics Center
    52 * [http://www.lifelines.nl LifeLines] - 30yr/165.000 people cohort study
    53 * [http://www.ebi.ac.uk EBI] - European Bioinformatics Institute
    54 * [http://www.gen2phen.org EU-GEN2PHEN] - Genotype to Phenotype project
    55 * [http://www.casimir.ac.uk CASIMIR] - Coordination and Sustainability of International Mouse Informatics Resources
    56 * [http://www.helmholtz-hzi.de/en/research/host_resistance_and_susceptibility/infection_genetics/externally_funded_projects/sysgenet/ SYSGENET] -  European systems genetics network
    57 
    58 }}}
     33= MOLGENIS Users =
     34The MOLGENIS project is supported by the University Medical Center Groningen [http://www.rug.nl/umcg/faculteit/disciplinegroepen/medischegenetica/research/index UMCG], Groningen Bioinformatics Center [http://www.rug.nl/gbic GBIC], European Bioinformatics Institute [http://www.ebi.ac.uk EBI] and the Netherlands Bioinformatics Center [http://www.nbic.nl NBIC]. Are you curious who is using MOLGENIS, or would like to list your own name, visit the MolgenisUsers page.  Also don't hesitate to add to the MolgenisSystemList