News

MOLGENIS moved to github

We are delighted to report that all code of MOLGENIS is now in GitHub?. See ​http://www.github.com/molgenis. For those not yet up to speed with github we prepared two tutorials: [​https://docs.google.com/presentation/d/134WeHhs8bpWNaAO005QoYMLnnPgHCuR ...

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• Posted: 12 years ago (Updated: 12 years ago)
• Author: Morris Swertz
• Categories: xgap pheno molgenis
• Comments (0)

PathoKB poster at HVP 2012

First public announcement of PathoKB as poster at the ​4th Human Variome Project meeting, Paris. Download as ​pdf

• Posted: 12 years ago (Updated: 12 years ago)
• Author: Morris Swertz
• Categories: pathokb molgenis
• Comments (0)

Observ-OM data model published

Observ-OM and Observ-TAB, the Universal syntax solutions for the integration, search, and exchange of phenotype and genotype information, is published in ​Human Mutation. Genetic and epidemiological resear ...

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• Posted: 13 years ago
• Author: Morris Swertz
• Categories: observ molgenis
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CHD7 mutation database published

We are proud with another ​MOLGENIS for the CHARGE syndrome using ​Observ-OM published in ​Human Mutation. CHD7 is a member of the chromodomain helicase DNA- ...

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• Posted: 13 years ago (Updated: 13 years ago)
• Author: Morris Swertz
• Categories: observ molgenis
• Comments (0)

xQTL workbench paper published

See ​http://bioinformatics.oxfordjournals.org/content/28/7/1042. QTL workbench is a scalable web platform for the mapping of quantitative trait loci (QTLs) at multiple levels: for example gene expression (eQTL), protein abundance (pQTL), metabolite ab ...

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• Posted: 13 years ago (Updated: 13 years ago)
• Author: Morris Swertz
• Categories: xgap molgenis
• Comments (0)

Rapid generation of biosoftware you want to have

Just download a preconfigured MOLGENIS or generate your own in three steps:

1. Model what you want for your experiment in a simple XML file ​example db, ​example ui
2. Run the MOLGENIS generator
3. Use your web application ​example.

Each MOLGENIS comes with rich data management interface and plug-in integration of analysis tools in R, Java and web services.

Using MOLGENIS

• MolgenisGuide -- How to generate your own molgenis
• MolgenisDownload -- Get the software
• MolgenisSystemList -- Examples of MOLGENIS powered systems
• MolgenisFaq -- Frequently asked questions about MOLGENIS and its use
• MolgenisSystemList -- Catalog of existing MOLGENIS systems you can use as starting point
• MolgenisSourceCode -- Browse and hack the source code
• MolgenisJavaDoc? -- Explore the APIs
• MolgenisGoogleGroup -- Join our google group mail forum for all things around MOLGENIS
• Watch it evolve: ChangeLog, ​RoadMap
• MolgenisModules -- add ons developed on top of MOLGENIS

For a complete list of available wiki pages, see the TitleIndex.

Getting involved

​Register and then login to:

• TracGuide -- Read on how to use this website, and how to add content
• MolgenisProject -- Who is currently behind MOLGENIS
• Apply for a MolgenisInternship
• Add to the MolgenisGuide,
• brainstorm new ideas on MolgenisEnhancements
• or hack the MolgenisSourceCode.
• SequencingWiki

MOLGENIS Users

The MOLGENIS project is supported by the University Medical Center Groningen ​UMCG, Groningen Bioinformatics Center ​GBIC, European Bioinformatics Institute ​EBI and the Netherlands Bioinformatics Center ​NBIC. Are you curious who is using MOLGENIS, or would like to list your own name, visit the MolgenisUsers? page. Also don't hesitate to add to the MolgenisSystemList