• Create account @ ​https://github.com/
• Fork ​https://github.com/molgenis/molgenis & ​https://github.com/molgenis/molgenis_apps
• download github command line version

configure

https://help.github.com/articles/set-up-git

• @commandline try retrieving projects by CLONING (Fork a repository online (molgenis/molgenis)) :
  • create folders, cd there and try (Clone it to your HDD) . After forking a molgenis
  • repos: git clone git@…:<yourname>/molgenis.git
  • git clone ​https://github.com/<username>/molgenis.git
  • git clone ​https://github.com/<username>/molgenis_apps.git
  • git remote add molgenis ​https://github.com/molgenis/molgenis.git
  • ​git remote add molgenis https://github.com/molgenis_apps/molgenis_apps.git
  • ​git remote
  • ​git remote -v
  • ​Pull from the remote
    • ​git pull molgenis master

update project = pull project

• Go into the directory molgenis git pull --all

"commit" = push a change :

• Edit a file vi DEVELOPERS
• git add filename
• git status
• git diff
• git commit -a (Commit the code locally, ) or git commit –m ‘Changed a file’
• git status
• git push origin ( If your done update your ‘fork’ git push, Push the local commits to your repository)
• git push origin master (Add an upstream remote)

On the website: Create a PULL request to: molgenis/molgenis/master This will pack ALL current changes in master to be submitted to molgenis WHICH IS BAD! GOOGLE: “Creating good pull request” ! ​https://help.github.com/articles/using-pull-requests

Work within a branch.

Create a pull request for 1 branch !

• git branch new_feat
• git branch bug_fixes
• git checkout new_feat

Hack AWAY, all commits are to new_feat, when you push the first time:

• git push origin new_feat

Every morning:

• PULL from the molgenis organisation : *git remote add molgenis ​git://github.com/molgenis/molgenis.git
• GIT STATUS -> if changes:
• git commit (or git stash)
• Get changes git pull molgenis master Solve any conflict git commit –m “Morning molgenis merge” git push

WORD of WARNING

• NEVER force push origin master
• If you cannot push, you need to pull ☺
• Force push destroys your fork !!!!
• So just never
• If you did ☹ you should: Directly delete your repository on the website fork, clone,
• remote add -> molgenis/molgenis again
• If you have stuff you want to keep:
• SAVE the files outside of the repos, and commit them back in after you setup a new remote fork and local repository

Git @ eclipse

​http://www.vogella.com/articles/EGit/article.html

​http://wiki.eclipse.org/Git

Troubleshooting

Problem with push in eclipse : 

http://stackoverflow.com/questions/9003840/how-do-i-push-to-git-repo-given-the-following-error-an-internal-exception-occur

2[ down vote]

I faced the same problem and I found out solution which is extremely foolish. I took following steps: * I logged into git repository of my project from browser and didn't sign out. * I copied the http url to push or pull from project repository from github. * I pasted the url in my eclipse plugin while pushing code (didn't use the already stored one even though both of them were same) I don't know what and why but above steps have worked for me whenever I have faced above problem. I don't know why does eclipse throw such exceptions and why does it gets solved this way. You can also try pushing using other ways outside of eclipse. for eg. `TortoiseGit` or `SmartGit` etc.