| | 2 | |
| | 3 | You will need: [http://ant.apache.org/ Ant], [http://subversion.apache.org/ Subversion], [http://www.java.com/ Java].[[BR]] |
| | 4 | [[BR]] |
| | 5 | Create a directory somewhere to work in, eg. `/Users/harry/xqtl`, and `cd` to there. Run these commands:[[BR]] |
| | 6 | [[BR]] |
| | 7 | `svn co -r 8408 http://www.molgenis.org/svn/molgenis/trunk/ molgenis`[[BR]] |
| | 8 | `svn co -r 8410 http://www.molgenis.org/svn/molgenis_apps/trunk/ molgenis_apps`[[BR]] |
| | 9 | `svn update -r 8430 molgenis_apps/xqtl_dev.xml`[[BR]] |
| | 10 | `ant -f molgenis_apps/xqtl_dev.xml make_run`[[BR]] |
| | 11 | [[BR]] |
| | 12 | App is now running at: `http://localhost:8080/molgenis_apps`[[BR]] |
| | 13 | First, setup database using: `http://localhost:8080/molgenis_apps/resetdatabase_4EE1D7A3E73C504183B69F7D20108853`[[BR]] |
| | 14 | Login with user/pw: `admin` / `admin`[[BR]] |
| | 15 | Go to Settings -> File storage. Enter path or use default, click 'Set path' and 'Validate'[[BR]] |
| | 16 | Now go to 'Database' and click 'Load example data'[[BR]] |
| | 17 | [[BR]] |
| | 18 | Things you can do next are.. |
| | 19 | [[BR]] |
| | 20 | * Change the admin password[[BR]] |
| | 21 | * Make users and put them in the group 'biologist' or 'bioinformatician'[[BR]] |
| | 22 | * Import new data[[BR]] |
| | 23 | * Explore existing data[[BR]] |
| | 24 | * Install R packages and run QTL mapping locally[[BR]] |
| | 25 | * Add a new analysis R script[[BR]] |
| | 26 | * Run an analysis on the cluster[[BR]] |
| | 27 | |
| | 28 | = OLDER STUFF = |
