Changes between Version 10 and Version 11 of xQTLBiologistImport


Ignore:
Timestamp:
2012-01-30T15:02:12+01:00 (12 years ago)
Author:
jvelde
Comment:

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  • xQTLBiologistImport

    v10 v11  
    55=== Geno- and phenotypic data ===
    66
    7 * A special importer for this kind of data is available under the tab ''Import data''.
     7* A special importer for R/qtl data is available under the tab ''Upload data''.
    88* First, choose the Investigation where you want to upload into.
    99* Select a geno, pheno or map file in the corresponding location and press ''Upload''.
    … …  
    2121
    2222Please check the following:
    23 * The markers in the genotype matrix must be annotated in the map file. The names must exactly match. Check use the ''Inspector'' tool in ''View data'' to verify data consistency. You can always manually add or manipulate markers at any point using ''View annotations'', click ''Markers''.
     23* The markers in the genotype matrix must be annotated in the map file. The names must exactly match. Check use the ''Inspect'' tool in ''Data matrices'' to verify data consistency. You can always manually add or manipulate markers at any point using ''View annotations'', click ''Markers''.
    2424* For a correct new data set, the exact same individual names must be used in the genotype and phenotype file.
    2525* The QTL analysis needs to know which type of cross was used. It looks at the annotation of the '''first individual''' of the genotypes to get cross type from the ''ontologyReference'' field. Set this to e.g. ''xgap_rqtl_straintype_riself'' to indicate the cross is a recombinant inbred line by selfing. The coding is taken from Rqtl.
    … …  
    3636
    3737Data matrices:
    38 * Matrix data can be added by creating a new ''Data'' record in the ''View data'' tab.
    39 * The ''Manager'' viewer will inform you there is no data linked to this entry, and you can upload it via direct CSV input or file.
     38* Matrix data can be added by creating a new ''Data'' record in the ''Data matrices'' tab.
     39* The ''View'' plugin will inform you there is no data linked to this entry, and you can upload it via direct CSV input or file.