Changes between Version 1 and Version 2 of xQTLBiologistRun

Timestamp:

2011-09-06T11:58:12+02:00 (13 years ago)

Author:

jvelde

Comment:

--

xQTLBiologistRun

@@ -4 +4 @@
 
 go to 'Run QTL mapping'
+
+
+= old stuff =
+
+== User manual ==
+=== Starting a job ===
+ * Use to the 'Compute on data' button in the welcome screen or select 'Start and manage jobs' from the main menu
+ * Select the compute resource to be used for the new analysis from the bottom and click the 'Create new job' button
+ * Select the type of analysis and select a number of sub jobs (click next)
+ * Select/provide the parameters for the analysis 
+
+Start the analysis by pressing: 'start', this will take you to the job manager interface
+
+=== Monitoring job progression ===
+ * Use to the 'Compute on data' button in the welcome screen or select 'Start and manage jobs' from the main menu
+ * Click the 'Job manager' button, this will take you to the job manager interface
+ * The Refresh box can be used to speed up / slow down polling interval (5, 15, 30, 60 seconds or off)
+
+=== Analysis administration ===
+
+Go to the Job manager here the following administration task can be performed:
+
+ * Status of all running sub jobs can be monitored by hovering over the sub job box
+ * Provenance is kept by storing the analysis parameters in the database these can be viewed by hovering over the hover button
+ * Provenance of completed jobs can be removed by clicking the [x] button, NOTE: this will NOT delete results stored into the database
+ * Failed sub jobs (status -1) can be resubmitted by clicking on them
+
+In the 'Browse data' section:
+
+ * Raw numeric output can be viewed / edited / deleted from each analysis (Type: Data)
+ * Data consistency checks can be seen in the Inspector tab (Type: Data, Sub Types: Inspector)
+ * Basic plots can be created / viewed 'on the fly' (Type: Data, Sub Types: Heatmap / Rplot)
+ * Image data can be viewed / edited / deleted from each analysis (Type: Image)