Changes between Version 14 and Version 15 of xQTLUserReview
- Timestamp:
- 2011-11-30T15:21:35+01:00 (13 years ago)
Legend:
- Unmodified
- Added
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xQTLUserReview
v14 v15 66 66 67 67 || Needed field || Example value || xQTL field || 68 || Experiment ID || TEMP16_EXP || name of ProtocolApplication/Data ||68 || Experiment ID || TEMP16_EXP || name of ProtocolApplication/Data || 69 69 || Measured || Gene expression || tag of data set || 70 70 || Platform || WSU || phenotype of each sample in the set || 71 || Growing temperature || 16 || phenotype of each sample in the set ||71 || Growing temperature || 16 || phenotype of each sample in the set || 72 72 || Stage || L4 || phenotype of each sample in the set || 73 73 || Hours || || phenotype of each sample in the set || 74 || Treatment || No || phenotype of each sample in the set ||75 || Remarks || || description of ProtocolApplication/Data ||74 || Treatment || No || phenotype of each sample in the set || 75 || Remarks || || description of ProtocolApplication/Data || 76 76 77 77 Projects [List] '''-> xQTL entity: ???'''[[BR]] 78 78 List to link experiments together, because multiple experiments under different conditions can belong to one project. Might also be a way to give access to the different groups of data. 79 79 80 || Needed field || Example value || xQTL field || 81 || Project ID || GROW_TEMP || name || 82 || Experiment ID || TEMP16_EXP || ??? || 83 || Publications || Li etal 2006 || ??? || 80 Suggested solution for future: 81 * remove InvestigationElement (should become ownership groups) 82 * make mref Investigation->ProtocolApplication to bundle data sets into one project/investigation (=organization of research) 83 * use ProtocolApplication.previousStep to show how the data flow was from raw data to results 84 * use row level security groups to secure ObservationElement and/or ProtocolApplication/Data (= organization of ownership) 85 86 Current solution: 87 * make 'experimentId' and 'projectid' just phenotypes or tags 88 89 || Needed field || Example value || xQTL field || 90 || Project ID || GROW_TEMP || use Data.ontologyReference || 91 || Experiment ID || TEMP16_EXP || use Data.ontologyReference || 92 || Publications || Li etal 2006 || ??? TODO || 84 93 || Remarks || || description || 85 94 … … 90 99 || Dataset ID || DATA_TEMP16 || name || 91 100 || Type || Gene expression || ontologyreference_name || 92 || Unit || Log 2 intensities || ???||93 || Processed || Normalized || ???||94 || Experiment ID || TEMP16_EXP || ???||101 || Unit || Log 2 intensities || tag || 102 || Processed || Normalized || tag || 103 || Experiment ID || TEMP16_EXP || tag || 95 104 || Remarks || || description || 96 105
