Changes between Version 4 and Version 5 of xQTLUserReview


Ignore:
Timestamp:
2011-11-18T14:13:29+01:00 (13 years ago)
Author:
jvelde
Comment:

->

Legend:

Unmodified
Added
Removed
Modified

  • xQTLUserReview

    v4 v5  
     1== Report builder feedback 18 nov 2011 ==
     2Yang:
     3* Use but does not help you to 'get to know' the data in the first place.
     4* Wanted:
     5 * Quantative data: boxplot of measurements for each sample/individual, to inspect and detect/remove outliers
     6 -> Use e.g. boxplot(log(metaboliteexpression, exp(2.71828)))
     7 -> Or boxplot(log(t(metaboliteexpression), exp(2.71828))) for the (transposed) 'other view'
     8 * Qualitative data: heatmap like view of e.g. genotypes
     9 -> Use e.g. image(matrix(as.numeric(as.factor(genotypes)),nrow(genotypes),ncol(genotypes)))
     10 -> Or heatmap(matrix(as.numeric(as.factor(genotypes)),nrow(genotypes),ncol(genotypes)),scale="none",Colv=NA, Rowv=NA)
     11Basten:
     12* Enter gene -> get all eQTL information! Simple as can be.
     13* Cis/trans information
     14* Find genes in a region and get their QTLS (sounds like gBrowse)
     15* Ofcourse everything in document 'concept map'
     16
    117== Panacea xQTL review Wed 9 nov 2011 ==
    218* Data curation and annotation of the Panacea Database (joint effort)