• Plans & action points for the Hackathon:
  • Get D2RQ, ok ,including Jena.Installed.:
  • ​http://www4.wiwiss.fu-berlin.de/bizer/d2rq/spec/#usingmodel
  • Jena : problem in communicating with mapping file through D2RQ model:

    '''ModelD2RQ m =  new ModelD2RQ("!file:doc/mapping-iswc.n3");'''
    

    • D2RQ uses the ​Apache Commons - Logging API for logging.
  • Command line needs:

    $ export ARQROOT=~/ARQ-0.9.5
    $ chmod +rx $ARQROOT/bin/*
    $ export PATH=$PATH:$ARQROOT/bin
    $ sparql
    	Usage: [--data URL] [exprString | --query file]
    

    COMMAND_LINE/cygdrive/d/despoina/JenaRoot/bin
    $ sparql
    No query string or query file
    
    COMMAND_LINE/cygdrive/d/despoina/JenaRoot/bin
    $ vi a.rq
    
    ...write sparql query
    COMMAND_LINE/cygdrive/d/despoina/JenaRoot/bin
    $ sparql --query a.rq
    

• The RDF files are missing of course ...so no return results.
• ​http://planetrdf.com/
• Term Choose widget. ​http://www.geonames.org/export/ajax-postalcode-autocomplete.html
• Install Peregrine - Run Peregrine [Peregrine - ontoCAT - MOLGENIS integration]
  • New Test for
  • ​https://wiki.nbic.nl/index.php/Peregrine_Usage#Not_using_maven_.26_spring
  • and package from here : ​http://ws1.grid.sara.nl:21501/artifactory/libs-snapshots-local/org/erasmusmc/data-mining/release/0.3-SNAPSHOT/release-0.3-SNAPSHO
  • PeregrineTest3 OK running!
• Disease book : downloaded latest version from SVN
  • In order to run need molgenis3_3 (where is the setting of choosing/changing the name/path to a molgenis release?)
    • At the moment downloaded a new release of molgenis --> rename it to 3_3
    • Problem running
    • Mail to Mark.

• Sparql from javascript library.
  • More sparql tests.
  • conflicts?
• Tabulator : The Tabulator is a generic data browser and editor. Using outline and table modes, it provides a way to browse RDF/Linked Data on the web. RDF is the standard for inter-application data exchange.
  • ​http://www.w3.org/2005/ajar/tab
  • ​http://dig.csail.mit.edu/2005/ajar/release/tabulator/0.7/tab.html
  • * Loading Data:
  • Once the Tabulator Extension is installed, simply loading a file that is served with mime type "application/rdf+xml" or "text/n3" will cause the document to be loaded in an outline view (try ​http://dig.csail.mit.edu/2005/ajar/ajaw/data#Tabulator).
• ​http://www4.wiwiss.fu-berlin.de/bizer/ng4j/semwebclient/index.html
• ​http://www4.wiwiss.fu-berlin.de/bizer/ng4j/disco/
• ​http://www.ibm.com/developerworks/xml/library/j-sparql/
  • ​https://www.ibm.com/developerworks/java/library/j-jena/
  • ​http://www.ibm.com/developerworks/xml/library/j-sparql/
  • ​http://www.w3.org/TR/rdf-sparql-query/