| | 1 | * Plans & action points for the Hackathon: |
| | 2 | * Get D2RQ, ok ,including Jena.Installed.: |
| | 3 | * http://www4.wiwiss.fu-berlin.de/bizer/d2rq/spec/#usingmodel |
| | 4 | * Jena : problem in communicating with mapping file through D2RQ model: |
| | 5 | {{{ |
| | 6 | '''ModelD2RQ m = new ModelD2RQ("!file:doc/mapping-iswc.n3");''' |
| | 7 | }}} |
| | 8 | * D2RQ uses the [http://jakarta.apache.org/commons/logging/ Apache Commons - Logging] API for logging. |
| | 9 | * Command line needs: |
| | 10 | {{{ |
| | 11 | $ export ARQROOT=~/ARQ-0.9.5 |
| | 12 | $ chmod +rx $ARQROOT/bin/* |
| | 13 | $ export PATH=$PATH:$ARQROOT/bin |
| | 14 | $ sparql |
| | 15 | Usage: [--data URL] [exprString | --query file] |
| | 16 | }}} |
| | 17 | {{{ |
| | 18 | COMMAND_LINE/cygdrive/d/despoina/JenaRoot/bin |
| | 19 | $ sparql |
| | 20 | No query string or query file |
| | 21 | |
| | 22 | COMMAND_LINE/cygdrive/d/despoina/JenaRoot/bin |
| | 23 | $ vi a.rq |
| | 24 | |
| | 25 | ...write sparql query |
| | 26 | COMMAND_LINE/cygdrive/d/despoina/JenaRoot/bin |
| | 27 | $ sparql --query a.rq |
| | 28 | }}} |
| | 29 | * The RDF files are missing of course ...so no return results. |
| | 30 | * http://planetrdf.com/ |
| | 31 | * Term Choose widget. http://www.geonames.org/export/ajax-postalcode-autocomplete.html |
| | 32 | * Install Peregrine - Run Peregrine [Peregrine - ontoCAT - MOLGENIS integration] |
| | 33 | * New Test for |
| | 34 | * https://wiki.nbic.nl/index.php/Peregrine_Usage#Not_using_maven_.26_spring |
| | 35 | * and package from here : [http://ws1.grid.sara.nl:21501/artifactory/libs-snapshots-local/org/erasmusmc/data-mining/release/0.3-SNAPSHOT/release-0.3-SNAPSHOT.zip http://ws1.grid.sara.nl:21501/artifactory/libs-snapshots-local/org/erasmusmc/data-mining/release/0.3-SNAPSHOT/release-0.3-SNAPSHO] |
| | 36 | * PeregrineTest3 OK running! |
| | 37 | * Disease book : downloaded latest version from SVN |
| | 38 | * In order to run need molgenis3_3 (where is the setting of choosing/changing the name/path to a molgenis release?) |
| | 39 | * At the moment downloaded a new release of molgenis --> rename it to 3_3 |
| | 40 | * Problem running |
| | 41 | * Mail to Mark. |
| | 42 | |
| | 43 | * Sparql from javascript library. |
| | 44 | * More sparql tests. |
| | 45 | * conflicts? |
| | 46 | * Tabulator : The Tabulator is a generic data browser and editor. Using outline and table modes, it provides a way to browse RDF/Linked Data on the web. RDF is the standard for inter-application data exchange. |
| | 47 | * http://www.w3.org/2005/ajar/tab |
| | 48 | * http://dig.csail.mit.edu/2005/ajar/release/tabulator/0.7/tab.html |
| | 49 | * * Loading Data: |
| | 50 | * Once the Tabulator Extension is installed, simply loading a file that is served with mime type "application/rdf+xml" or "text/n3" will cause the document to be loaded in an outline view (try http://dig.csail.mit.edu/2005/ajar/ajaw/data#Tabulator). |
| | 51 | * http://www4.wiwiss.fu-berlin.de/bizer/ng4j/semwebclient/index.html |
| | 52 | * http://www4.wiwiss.fu-berlin.de/bizer/ng4j/disco/ |
| | 53 | * http://www.ibm.com/developerworks/xml/library/j-sparql/ |
| | 54 | * https://www.ibm.com/developerworks/java/library/j-jena/ |
| | 55 | * http://www.ibm.com/developerworks/xml/library/j-sparql/ |
| | 56 | * http://www.w3.org/TR/rdf-sparql-query/ |
