| | 1 | === debug on Lucene indexing on molgenis dbs === |
| | 2 | Using !MultiSearcher in Lucene "all database tables" search : |
| | 3 | |
| | 4 | * http://stackoverflow.com/questions/958043/pros-and-cons-of-using-lucenes-multisearcher-class |
| | 5 | * Search on multiple indexes: |
| | 6 | * https://issues.apache.org/jira/browse/LUCENE-556 |
| | 7 | * http://lucene.apache.org/java/2_4_0/api/org/apache/lucene/search/Searchable.html * |
| | 8 | |
| | 9 | On DBIndexPlugin.java: SearchLuceneIndex: |
| | 10 | |
| | 11 | * if you copy index created on the single gene table - search work: problem @ creation of index. |
| | 12 | * "All tables index" insert in db like this: |
| | 13 | * field : ring finger and WD repeat domain 2 pseudogene |
| | 14 | * field : 27036 |
| | 15 | * field : TBCAP1 |
| | 16 | * field: Xp21 |
| | 17 | * "Single table index " inserts like |
| | 18 | |
| | 19 | * * stored,omitNorms<geneName:PPRC1> Gene(id='9580' geneName='PPRC1' chromosomeLocation='10q24.32' geneDescription='peroxisome proliferator-activated receptor gamma, coactivator-related 1'); |
| | 20 | * Fields are inserted now in the form of : |
| | 21 | * nullclass hvp_pilot2.Gene(id='45020')class hvp_pilot2.Gene(geneName='MIR1287')class hvp_pilot2.Gene(chromosomeLocation='10q24.2')class hvp_pilot2.Gene(geneDescription='microRNA 1287') |
| | 22 | * * So probably the problem may be in the retrieval of these fields (search index - specify the field names for the db class. (NExt todo ) |
| | 23 | |
| | 24 | === (From ICT plan system biology --> OpenBIS : ) === |
| | 25 | === http://www.cisd.ethz.ch/software/openBIS === |
| | 26 | https://wiki-bsse.ethz.ch/download/attachments/43126125/openBIS_intro_AB_20100421.mp4 |
